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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:47.8 nTPM
HPA Brain:72.8 nTPM
GTEx:47.8 nTPM
FANTOM5:48.9 Scaled Tags Per Million
Pig:55.2 nTPM
Mouse:32.1 nTPM
Allen mouse:9.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

72.8
Sample id Sample description nTPM
Amygdala
nTPM: 66.9
2814 Male, age 76, right hemisphere 73.4
2517 Female, age 94, left hemisphere 67.6
2514 Male, age 75, right hemisphere 65.9
1987 Female, age 91, left hemisphere 65.8
2695 Female, age 67, right hemisphere 61.7
Basal amygdala
nTPM: 72.3
2685 Female, age 94, left hemisphere 77.0
2243 Female, age 91, right hemisphere 76.3
2609 Male, age 75, right hemisphere 73.1
2110 Male, age 80, left hemisphere 70.9
2827 Female, age 67, right hemisphere 69.7
1955 Male, age 76, both hemispheres 67.1
Central amygdala
nTPM: 72.8
2826 Female, age 94, left hemisphere 79.9
2515 Male, age 75, right hemisphere 73.1
2239 Male, age 80, left hemisphere 72.6
2701 Female, age 91, right hemisphere 69.5
1905 Male, age 76, both hemispheres 69.1
Corticomedial amygdala
nTPM: 69.6
2242 Female, age 91, right hemisphere 74.1
2829 Male, age 80, left hemisphere 72.8
2428 Male, age 75, right hemisphere 71.5
2535 Female, age 67, right hemisphere 70.8
2240 Male, age 76, both hemispheres 64.3
2429 Female, age 94, left hemisphere 64.3
Lateral amygdala
nTPM: 71.4
2534 Female, age 94, left hemisphere 81.2
2256 Male, age 80, left hemisphere 73.0
2255 Female, age 91, right hemisphere 72.1
2516 Male, age 75, right hemisphere 69.0
1883 Male, age 76, both hemispheres 67.3
2830 Female, age 67, right hemisphere 66.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 47.8
Samples: 181

Max nTPM: 100.5
Min nTPM: 28.8
Std nTPM: 11.2
Median nTPM: 47.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 100.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 86.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 74.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 73.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 72.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 70.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 70.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 69.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 68.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 67.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 66.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 65.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 65.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 64.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 63.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 62.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 62.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 62.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 61.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 60.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 60.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 60.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 60.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 60.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 59.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 59.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 59.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 59.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 58.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 58.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 58.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 58.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 58.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 58.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 57.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 57.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 56.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 56.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 56.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 55.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 55.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 55.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 55.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 53.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 53.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 53.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 53.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 52.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 52.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 52.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 52.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 52.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 52.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 52.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 52.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 51.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 51.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 51.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 51.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 51.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 50.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 50.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 50.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 50.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 50.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 50.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 50.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 49.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 49.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 49.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 49.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 49.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 49.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 49.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 49.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 49.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 49.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 48.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 48.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 48.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 48.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 48.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 48.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 48.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 47.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 47.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 47.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 47.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 47.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 47.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 47.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 46.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 46.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 46.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 46.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 46.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 46.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 45.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 45.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 45.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 44.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 44.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 44.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 43.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 43.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 43.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 43.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 43.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 43.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 43.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 43.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 43.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 43.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 43.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 42.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 42.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 42.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 42.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 42.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 41.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 41.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 41.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 41.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 41.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 41.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 41.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 41.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 41.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 41.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 40.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 40.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 40.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 40.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 40.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 40.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 40.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 39.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 39.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 39.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 39.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 38.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 38.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 38.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 38.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 38.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 38.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 38.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 38.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 38.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 38.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 37.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 37.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 37.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 36.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 36.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 36.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 36.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 35.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 35.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 35.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 34.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 34.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 33.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 33.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 33.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 33.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 33.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 33.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 33.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 33.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 32.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 32.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 32.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 32.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 32.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 31.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 30.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 30.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 29.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 29.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 28.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

48.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 48.9
FF:10151-102I7 76 years, female 48.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.2
Pig sample Sample description nTPM
Amygdala
nTPM: 55.2
Samples: 4

Max nTPM: 71.7
Min nTPM: 45.6
Sample A Female 71.7
Sample B Female 45.6
Sample C Male 51.7
Sample D Male 51.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 32.1
Samples: 4

Max nTPM: 33.4
Min nTPM: 30.8
Sample A Male 30.8
Sample B Male 31.5
Sample C Female 33.4
Sample D Female 32.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

9.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.7
583864 Antisense, RP_040831_01_C03, Mouse strain C57BL/6J (56 days, male) 9.7

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