A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13.6
nTPM
Monaco:
39.2
nTPM
Schmiedel:
55.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.6
HPA sample
nTPM
Memory B-cell nTPM: 13.5
Samples: 6
Max nTPM: 16.3
Min nTPM: 10.4
P10809_1017
12.6
P10809_1025
10.4
P10809_1044
14.5
P10809_1063
16.3
P10809_1092
16.3
P10809_1105
11.1
Naive B-cell nTPM: 10.5
Samples: 6
Max nTPM: 12.3
Min nTPM: 9.4
P10809_1011
9.7
P10809_1029
9.4
P10809_1048
11.4
P10809_1067
9.8
P10809_1091
10.5
P10809_1104
12.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 32.7
Samples: 4
Max nTPM: 38.2
Min nTPM: 24.3
RHH5310_R3677
32.6
RHH5218_R3590
24.3
RHH5247_R3619
35.6
RHH5276_R3648
38.2
Naive B-cell nTPM: 35.6
Samples: 4
Max nTPM: 54.8
Min nTPM: 14.9
RHH5308_R3675
14.9
RHH5216_R3588
54.8
RHH5245_R3617
44.0
RHH5274_R3646
28.5
Non-switched memory B-cell nTPM: 30.1
Samples: 4
Max nTPM: 32.3
Min nTPM: 26.1
RHH5309_R3676
31.2
RHH5217_R3589
32.3
RHH5246_R3618
26.1
RHH5275_R3647
30.9
Plasmablast nTPM: 39.2
Samples: 4
Max nTPM: 45.4
Min nTPM: 34.5
RHH5312_R3679
34.5
RHH5220_R3592
41.9
RHH5249_R3621
45.4
RHH5278_R3650
34.8
Switched memory B-cell nTPM: 29.5
Samples: 4
Max nTPM: 33.8
Min nTPM: 25.1
RHH5311_R3678
30.4
RHH5219_R3591
25.1
RHH5248_R3620
28.6
RHH5277_R3649
33.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.3
Schmiedel sample id
TPM
Naive B-cell TPM: 55.3
Samples: 91
Max TPM: 83.6
Min TPM: 39.5
B_CELL_NAIVE_1
83.6
B_CELL_NAIVE_2
81.3
B_CELL_NAIVE_3
81.0
B_CELL_NAIVE_4
75.3
B_CELL_NAIVE_5
74.1
B_CELL_NAIVE_6
73.0
B_CELL_NAIVE_7
69.8
B_CELL_NAIVE_8
67.4
B_CELL_NAIVE_9
67.2
B_CELL_NAIVE_10
66.9
B_CELL_NAIVE_11
66.7
B_CELL_NAIVE_12
66.3
B_CELL_NAIVE_13
66.2
B_CELL_NAIVE_14
64.9
B_CELL_NAIVE_15
64.4
B_CELL_NAIVE_16
63.8
B_CELL_NAIVE_17
63.2
B_CELL_NAIVE_18
63.2
B_CELL_NAIVE_19
62.1
B_CELL_NAIVE_20
62.0
B_CELL_NAIVE_21
61.3
B_CELL_NAIVE_22
61.2
B_CELL_NAIVE_23
61.0
B_CELL_NAIVE_24
60.9
B_CELL_NAIVE_25
60.6
B_CELL_NAIVE_26
60.3
B_CELL_NAIVE_27
59.8
B_CELL_NAIVE_28
59.7
B_CELL_NAIVE_29
59.3
B_CELL_NAIVE_30
59.1
B_CELL_NAIVE_31
58.8
B_CELL_NAIVE_32
58.5
B_CELL_NAIVE_33
57.1
B_CELL_NAIVE_34
57.1
B_CELL_NAIVE_35
56.6
B_CELL_NAIVE_36
55.8
B_CELL_NAIVE_37
55.6
B_CELL_NAIVE_38
55.3
B_CELL_NAIVE_39
55.0
B_CELL_NAIVE_40
54.2
B_CELL_NAIVE_41
54.0
B_CELL_NAIVE_42
53.7
B_CELL_NAIVE_43
53.7
B_CELL_NAIVE_44
53.5
B_CELL_NAIVE_45
53.4
B_CELL_NAIVE_46
53.4
B_CELL_NAIVE_47
53.0
B_CELL_NAIVE_48
52.9
B_CELL_NAIVE_49
52.8
B_CELL_NAIVE_50
52.6
B_CELL_NAIVE_51
52.5
B_CELL_NAIVE_52
52.2
B_CELL_NAIVE_53
52.0
B_CELL_NAIVE_54
51.8
B_CELL_NAIVE_55
51.8
B_CELL_NAIVE_56
51.6
B_CELL_NAIVE_57
51.2
B_CELL_NAIVE_58
51.1
B_CELL_NAIVE_59
50.7
B_CELL_NAIVE_60
50.7
B_CELL_NAIVE_61
50.5
B_CELL_NAIVE_62
50.3
B_CELL_NAIVE_63
50.2
B_CELL_NAIVE_64
50.1
B_CELL_NAIVE_65
50.0
B_CELL_NAIVE_66
49.8
B_CELL_NAIVE_67
49.7
B_CELL_NAIVE_68
49.5
B_CELL_NAIVE_69
49.3
B_CELL_NAIVE_70
49.3
B_CELL_NAIVE_71
48.9
B_CELL_NAIVE_72
48.5
B_CELL_NAIVE_73
48.3
B_CELL_NAIVE_74
47.8
B_CELL_NAIVE_75
47.6
B_CELL_NAIVE_76
46.7
B_CELL_NAIVE_77
46.4
B_CELL_NAIVE_78
46.1
B_CELL_NAIVE_79
45.6
B_CELL_NAIVE_80
45.3
B_CELL_NAIVE_81
44.6
B_CELL_NAIVE_82
44.5
B_CELL_NAIVE_83
44.3
B_CELL_NAIVE_84
43.8
B_CELL_NAIVE_85
43.3
B_CELL_NAIVE_86
43.0
B_CELL_NAIVE_87
42.9
B_CELL_NAIVE_88
41.1
B_CELL_NAIVE_89
41.1
B_CELL_NAIVE_90
40.4
B_CELL_NAIVE_91
39.5
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The Human Protein Atlas project is funded
