A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.0
nTPM
Monaco:
21.3
nTPM
Schmiedel:
35.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.0
HPA sample
nTPM
Classical monocyte nTPM: 4.6
Samples: 6
Max nTPM: 5.1
Min nTPM: 3.5
P10809_1003
5.1
P10809_1020
4.9
P10809_1039
3.5
P10809_1058
4.7
P10809_1080
4.6
P10809_1107
4.8
Intermediate monocyte nTPM: 5.0
Samples: 6
Max nTPM: 9.3
Min nTPM: 3.3
P10809_1004
4.7
P10809_1023
3.7
P10809_1042
4.4
P10809_1061
9.3
P10809_1081
4.6
P10809_1108
3.3
Non-classical monocyte nTPM: 3.4
Samples: 5
Max nTPM: 4.2
Min nTPM: 1.7
P10809_1005
4.2
P10809_1053
3.6
P10809_1072
3.2
P10809_1082
4.1
P10809_1109
1.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.3
Monaco sample
nTPM
Classical monocyte nTPM: 15.6
Samples: 4
Max nTPM: 18.5
Min nTPM: 13.1
RHH5313_R3680
13.1
RHH5221_R3593
17.0
RHH5250_R3622
13.7
RHH5279_R3651
18.5
Intermediate monocyte nTPM: 20.5
Samples: 4
Max nTPM: 31.7
Min nTPM: 13.6
RHH5314_R3681
13.6
RHH5222_R3594
31.7
RHH5251_R3623
18.4
RHH5280_R3652
18.3
Non-classical monocyte nTPM: 21.4
Samples: 4
Max nTPM: 26.5
Min nTPM: 13.6
RHH5315_R3682
13.6
RHH5223_R3595
26.5
RHH5252_R3624
22.5
RHH5281_R3653
22.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.0
Schmiedel sample id
TPM
Classical monocyte TPM: 16.3
Samples: 91
Max TPM: 26.6
Min TPM: 10.6
MONOCYTES_1
26.6
MONOCYTES_2
26.2
MONOCYTES_3
23.8
MONOCYTES_4
22.8
MONOCYTES_5
22.2
MONOCYTES_6
21.7
MONOCYTES_7
21.4
MONOCYTES_8
20.9
MONOCYTES_9
20.7
MONOCYTES_10
20.6
MONOCYTES_11
20.4
MONOCYTES_12
20.4
MONOCYTES_13
20.3
MONOCYTES_14
20.2
MONOCYTES_15
20.1
MONOCYTES_16
19.7
MONOCYTES_17
19.6
MONOCYTES_18
19.5
MONOCYTES_19
19.4
MONOCYTES_20
19.4
MONOCYTES_21
18.9
MONOCYTES_22
18.7
MONOCYTES_23
18.7
MONOCYTES_24
18.6
MONOCYTES_25
18.5
MONOCYTES_26
18.2
MONOCYTES_27
18.1
MONOCYTES_28
18.1
MONOCYTES_29
18.0
MONOCYTES_30
17.9
MONOCYTES_31
17.7
MONOCYTES_32
17.6
MONOCYTES_33
17.3
MONOCYTES_34
17.3
MONOCYTES_35
17.2
MONOCYTES_36
16.9
MONOCYTES_37
16.8
MONOCYTES_38
16.5
MONOCYTES_39
16.3
MONOCYTES_40
16.3
MONOCYTES_41
16.3
MONOCYTES_42
16.2
MONOCYTES_43
16.2
MONOCYTES_44
16.2
MONOCYTES_45
16.1
MONOCYTES_46
16.1
MONOCYTES_47
15.9
MONOCYTES_48
15.8
MONOCYTES_49
15.6
MONOCYTES_50
15.6
MONOCYTES_51
15.6
MONOCYTES_52
15.4
MONOCYTES_53
15.2
MONOCYTES_54
15.0
MONOCYTES_55
14.9
MONOCYTES_56
14.9
MONOCYTES_57
14.9
MONOCYTES_58
14.8
MONOCYTES_59
14.6
MONOCYTES_60
14.6
MONOCYTES_61
14.6
MONOCYTES_62
14.5
MONOCYTES_63
14.5
MONOCYTES_64
14.4
MONOCYTES_65
14.4
MONOCYTES_66
14.4
MONOCYTES_67
14.4
MONOCYTES_68
14.4
MONOCYTES_69
14.0
MONOCYTES_70
13.7
MONOCYTES_71
13.1
MONOCYTES_72
12.9
MONOCYTES_73
12.9
MONOCYTES_74
12.8
MONOCYTES_75
12.7
MONOCYTES_76
12.6
MONOCYTES_77
12.6
MONOCYTES_78
12.4
MONOCYTES_79
12.3
MONOCYTES_80
12.2
MONOCYTES_81
12.0
MONOCYTES_82
12.0
MONOCYTES_83
11.9
MONOCYTES_84
11.8
MONOCYTES_85
11.8
MONOCYTES_86
11.8
MONOCYTES_87
11.6
MONOCYTES_88
11.4
MONOCYTES_89
11.2
MONOCYTES_90
10.7
MONOCYTES_91
10.6
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Non-classical monocyte TPM: 35.0
Samples: 90
Max TPM: 58.5
Min TPM: 19.7
M2_1
58.5
M2_2
55.0
M2_3
51.8
M2_4
50.0
M2_5
49.6
M2_6
47.8
M2_7
47.2
M2_8
46.3
M2_9
45.3
M2_10
44.2
M2_11
43.7
M2_12
43.2
M2_13
42.9
M2_14
42.6
M2_15
41.7
M2_16
41.4
M2_17
41.3
M2_18
39.0
M2_19
38.6
M2_20
38.3
M2_21
38.0
M2_22
37.5
M2_23
37.1
M2_24
37.1
M2_25
37.0
M2_26
36.8
M2_27
36.7
M2_28
36.6
M2_29
36.5
M2_30
36.4
M2_31
36.4
M2_32
36.2
M2_33
36.0
M2_34
35.9
M2_35
35.9
M2_36
34.7
M2_37
34.5
M2_38
34.3
M2_39
34.2
M2_40
34.2
M2_41
34.1
M2_42
34.1
M2_43
34.0
M2_44
34.0
M2_45
34.0
M2_46
34.0
M2_47
33.6
M2_48
33.5
M2_49
33.4
M2_50
33.3
M2_51
33.1
M2_52
32.6
M2_53
32.6
M2_54
32.6
M2_55
32.2
M2_56
32.1
M2_57
31.8
M2_58
31.8
M2_59
31.5
M2_60
31.2
M2_61
31.0
M2_62
30.9
M2_63
30.9
M2_64
30.8
M2_65
30.7
M2_66
30.5
M2_67
30.5
M2_68
30.2
M2_69
30.1
M2_70
30.0
M2_71
30.0
M2_72
29.9
M2_73
29.7
M2_74
29.6
M2_75
29.5
M2_76
29.4
M2_77
29.1
M2_78
28.8
M2_79
28.8
M2_80
28.7
M2_81
28.5
M2_82
28.1
M2_83
27.6
M2_84
27.6
M2_85
27.4
M2_86
26.4
M2_87
25.9
M2_88
25.8
M2_89
25.6
M2_90
19.7
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