A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
68.2
nTPM
Monaco:
77.1
nTPM
Schmiedel:
40.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
68.2
HPA sample
nTPM
Classical monocyte nTPM: 51.6
Samples: 6
Max nTPM: 62.7
Min nTPM: 41.3
P10809_1003
43.9
P10809_1020
54.0
P10809_1039
62.7
P10809_1058
41.3
P10809_1080
54.9
P10809_1107
52.6
Intermediate monocyte nTPM: 68.3
Samples: 6
Max nTPM: 94.2
Min nTPM: 53.0
P10809_1004
60.1
P10809_1023
78.2
P10809_1042
94.2
P10809_1061
66.0
P10809_1081
53.0
P10809_1108
58.0
Non-classical monocyte nTPM: 55.7
Samples: 5
Max nTPM: 71.7
Min nTPM: 40.3
P10809_1005
52.6
P10809_1053
71.7
P10809_1072
56.7
P10809_1082
40.3
P10809_1109
57.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
77.1
Monaco sample
nTPM
Classical monocyte nTPM: 77.1
Samples: 4
Max nTPM: 89.9
Min nTPM: 66.4
RHH5313_R3680
66.7
RHH5221_R3593
89.9
RHH5250_R3622
85.4
RHH5279_R3651
66.4
Intermediate monocyte nTPM: 76.1
Samples: 4
Max nTPM: 84.2
Min nTPM: 70.4
RHH5314_R3681
84.2
RHH5222_R3594
70.4
RHH5251_R3623
77.9
RHH5280_R3652
71.7
Non-classical monocyte nTPM: 76.5
Samples: 4
Max nTPM: 91.5
Min nTPM: 67.7
RHH5315_R3682
75.3
RHH5223_R3595
67.7
RHH5252_R3624
91.5
RHH5281_R3653
71.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.8
Schmiedel sample id
TPM
Classical monocyte TPM: 38.6
Samples: 91
Max TPM: 51.2
Min TPM: 24.5
MONOCYTES_1
51.2
MONOCYTES_2
50.0
MONOCYTES_3
49.6
MONOCYTES_4
48.5
MONOCYTES_5
48.1
MONOCYTES_6
47.9
MONOCYTES_7
46.5
MONOCYTES_8
46.5
MONOCYTES_9
46.1
MONOCYTES_10
45.9
MONOCYTES_11
45.8
MONOCYTES_12
45.4
MONOCYTES_13
45.0
MONOCYTES_14
44.9
MONOCYTES_15
44.9
MONOCYTES_16
44.8
MONOCYTES_17
44.7
MONOCYTES_18
44.7
MONOCYTES_19
44.4
MONOCYTES_20
44.3
MONOCYTES_21
43.9
MONOCYTES_22
43.8
MONOCYTES_23
43.7
MONOCYTES_24
42.7
MONOCYTES_25
42.5
MONOCYTES_26
42.4
MONOCYTES_27
42.1
MONOCYTES_28
41.9
MONOCYTES_29
41.8
MONOCYTES_30
41.6
MONOCYTES_31
41.6
MONOCYTES_32
41.2
MONOCYTES_33
41.1
MONOCYTES_34
41.0
MONOCYTES_35
40.8
MONOCYTES_36
40.6
MONOCYTES_37
40.6
MONOCYTES_38
40.3
MONOCYTES_39
40.1
MONOCYTES_40
40.0
MONOCYTES_41
40.0
MONOCYTES_42
39.4
MONOCYTES_43
39.2
MONOCYTES_44
39.0
MONOCYTES_45
38.7
MONOCYTES_46
38.6
MONOCYTES_47
38.4
MONOCYTES_48
38.2
MONOCYTES_49
37.9
MONOCYTES_50
37.8
MONOCYTES_51
37.3
MONOCYTES_52
37.2
MONOCYTES_53
37.1
MONOCYTES_54
37.1
MONOCYTES_55
37.1
MONOCYTES_56
36.9
MONOCYTES_57
36.8
MONOCYTES_58
36.3
MONOCYTES_59
36.2
MONOCYTES_60
36.0
MONOCYTES_61
36.0
MONOCYTES_62
35.9
MONOCYTES_63
35.9
MONOCYTES_64
35.9
MONOCYTES_65
35.7
MONOCYTES_66
35.6
MONOCYTES_67
35.6
MONOCYTES_68
35.4
MONOCYTES_69
35.2
MONOCYTES_70
35.1
MONOCYTES_71
34.7
MONOCYTES_72
34.1
MONOCYTES_73
33.9
MONOCYTES_74
33.6
MONOCYTES_75
33.5
MONOCYTES_76
32.7
MONOCYTES_77
32.5
MONOCYTES_78
32.1
MONOCYTES_79
31.9
MONOCYTES_80
31.6
MONOCYTES_81
31.4
MONOCYTES_82
30.1
MONOCYTES_83
29.4
MONOCYTES_84
28.5
MONOCYTES_85
28.0
MONOCYTES_86
27.9
MONOCYTES_87
26.8
MONOCYTES_88
26.6
MONOCYTES_89
26.2
MONOCYTES_90
25.4
MONOCYTES_91
24.5
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Non-classical monocyte TPM: 40.8
Samples: 90
Max TPM: 62.7
Min TPM: 15.8
M2_1
62.7
M2_2
58.1
M2_3
57.8
M2_4
55.8
M2_5
55.8
M2_6
54.6
M2_7
54.1
M2_8
53.9
M2_9
53.8
M2_10
52.5
M2_11
52.4
M2_12
51.6
M2_13
50.7
M2_14
50.6
M2_15
50.5
M2_16
50.5
M2_17
50.1
M2_18
49.9
M2_19
49.8
M2_20
49.5
M2_21
48.8
M2_22
48.8
M2_23
48.1
M2_24
48.0
M2_25
47.6
M2_26
47.3
M2_27
46.7
M2_28
46.6
M2_29
46.4
M2_30
46.2
M2_31
45.7
M2_32
45.7
M2_33
45.0
M2_34
44.8
M2_35
44.8
M2_36
44.4
M2_37
44.3
M2_38
44.0
M2_39
44.0
M2_40
43.7
M2_41
43.6
M2_42
43.5
M2_43
43.5
M2_44
43.5
M2_45
43.4
M2_46
42.7
M2_47
42.3
M2_48
42.3
M2_49
42.3
M2_50
41.7
M2_51
40.5
M2_52
40.2
M2_53
39.6
M2_54
39.6
M2_55
39.5
M2_56
39.5
M2_57
38.4
M2_58
38.3
M2_59
38.0
M2_60
37.7
M2_61
37.7
M2_62
37.3
M2_63
36.5
M2_64
35.7
M2_65
35.2
M2_66
35.1
M2_67
35.0
M2_68
34.7
M2_69
34.4
M2_70
34.3
M2_71
32.1
M2_72
31.8
M2_73
31.0
M2_74
30.3
M2_75
30.1
M2_76
28.6
M2_77
27.5
M2_78
27.4
M2_79
27.0
M2_80
26.6
M2_81
26.6
M2_82
24.8
M2_83
24.1
M2_84
24.0
M2_85
23.0
M2_86
22.4
M2_87
18.8
M2_88
18.4
M2_89
17.8
M2_90
15.8
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