A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
42.2
nTPM
Monaco:
636.5
nTPM
Schmiedel:
50.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.2
HPA sample
nTPM
Memory B-cell nTPM: 42.1
Samples: 6
Max nTPM: 58.6
Min nTPM: 33.7
P10809_1017
39.6
P10809_1025
37.6
P10809_1044
58.6
P10809_1063
33.7
P10809_1092
42.4
P10809_1105
40.9
Naive B-cell nTPM: 32.6
Samples: 6
Max nTPM: 55.2
Min nTPM: 18.3
P10809_1011
18.3
P10809_1029
33.3
P10809_1048
55.2
P10809_1067
25.7
P10809_1091
33.9
P10809_1104
29.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
636.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 95.5
Samples: 4
Max nTPM: 141.5
Min nTPM: 73.9
RHH5310_R3677
141.5
RHH5218_R3590
84.2
RHH5247_R3619
82.4
RHH5276_R3648
73.9
Naive B-cell nTPM: 62.3
Samples: 4
Max nTPM: 83.4
Min nTPM: 52.7
RHH5308_R3675
52.7
RHH5216_R3588
83.4
RHH5245_R3617
60.1
RHH5274_R3646
53.0
Non-switched memory B-cell nTPM: 87.5
Samples: 4
Max nTPM: 96.3
Min nTPM: 72.6
RHH5309_R3676
72.6
RHH5217_R3589
96.3
RHH5246_R3618
90.9
RHH5275_R3647
90.2
Plasmablast nTPM: 636.5
Samples: 4
Max nTPM: 678.6
Min nTPM: 577.5
RHH5312_R3679
678.5
RHH5220_R3592
577.5
RHH5249_R3621
611.4
RHH5278_R3650
678.6
Switched memory B-cell nTPM: 67.8
Samples: 4
Max nTPM: 74.0
Min nTPM: 58.7
RHH5311_R3678
71.6
RHH5219_R3591
58.7
RHH5248_R3620
66.7
RHH5277_R3649
74.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
50.1
Schmiedel sample id
TPM
Naive B-cell TPM: 50.1
Samples: 91
Max TPM: 84.7
Min TPM: 30.5
B_CELL_NAIVE_1
84.7
B_CELL_NAIVE_2
75.8
B_CELL_NAIVE_3
74.1
B_CELL_NAIVE_4
73.7
B_CELL_NAIVE_5
72.6
B_CELL_NAIVE_6
66.4
B_CELL_NAIVE_7
64.5
B_CELL_NAIVE_8
62.8
B_CELL_NAIVE_9
61.6
B_CELL_NAIVE_10
61.3
B_CELL_NAIVE_11
61.2
B_CELL_NAIVE_12
61.2
B_CELL_NAIVE_13
59.8
B_CELL_NAIVE_14
59.7
B_CELL_NAIVE_15
59.5
B_CELL_NAIVE_16
58.6
B_CELL_NAIVE_17
58.5
B_CELL_NAIVE_18
58.2
B_CELL_NAIVE_19
57.9
B_CELL_NAIVE_20
57.1
B_CELL_NAIVE_21
56.9
B_CELL_NAIVE_22
56.3
B_CELL_NAIVE_23
55.9
B_CELL_NAIVE_24
55.3
B_CELL_NAIVE_25
54.9
B_CELL_NAIVE_26
54.5
B_CELL_NAIVE_27
53.4
B_CELL_NAIVE_28
53.4
B_CELL_NAIVE_29
53.1
B_CELL_NAIVE_30
52.4
B_CELL_NAIVE_31
52.2
B_CELL_NAIVE_32
51.4
B_CELL_NAIVE_33
51.1
B_CELL_NAIVE_34
50.9
B_CELL_NAIVE_35
50.9
B_CELL_NAIVE_36
50.8
B_CELL_NAIVE_37
50.5
B_CELL_NAIVE_38
50.4
B_CELL_NAIVE_39
49.6
B_CELL_NAIVE_40
49.4
B_CELL_NAIVE_41
49.2
B_CELL_NAIVE_42
48.7
B_CELL_NAIVE_43
48.6
B_CELL_NAIVE_44
48.5
B_CELL_NAIVE_45
48.0
B_CELL_NAIVE_46
47.9
B_CELL_NAIVE_47
47.7
B_CELL_NAIVE_48
47.6
B_CELL_NAIVE_49
47.2
B_CELL_NAIVE_50
47.1
B_CELL_NAIVE_51
47.1
B_CELL_NAIVE_52
46.8
B_CELL_NAIVE_53
46.8
B_CELL_NAIVE_54
46.7
B_CELL_NAIVE_55
46.4
B_CELL_NAIVE_56
45.4
B_CELL_NAIVE_57
45.4
B_CELL_NAIVE_58
45.2
B_CELL_NAIVE_59
45.1
B_CELL_NAIVE_60
45.1
B_CELL_NAIVE_61
45.0
B_CELL_NAIVE_62
44.2
B_CELL_NAIVE_63
44.2
B_CELL_NAIVE_64
44.2
B_CELL_NAIVE_65
43.9
B_CELL_NAIVE_66
43.7
B_CELL_NAIVE_67
43.4
B_CELL_NAIVE_68
42.8
B_CELL_NAIVE_69
42.7
B_CELL_NAIVE_70
42.7
B_CELL_NAIVE_71
42.7
B_CELL_NAIVE_72
42.5
B_CELL_NAIVE_73
42.3
B_CELL_NAIVE_74
42.0
B_CELL_NAIVE_75
42.0
B_CELL_NAIVE_76
41.9
B_CELL_NAIVE_77
41.6
B_CELL_NAIVE_78
41.5
B_CELL_NAIVE_79
41.3
B_CELL_NAIVE_80
40.6
B_CELL_NAIVE_81
40.5
B_CELL_NAIVE_82
40.5
B_CELL_NAIVE_83
40.5
B_CELL_NAIVE_84
39.8
B_CELL_NAIVE_85
39.5
B_CELL_NAIVE_86
39.1
B_CELL_NAIVE_87
38.5
B_CELL_NAIVE_88
38.4
B_CELL_NAIVE_89
38.0
B_CELL_NAIVE_90
36.8
B_CELL_NAIVE_91
30.5
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The Human Protein Atlas project is funded
