A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
35.9
nTPM
Monaco:
86.4
nTPM
Schmiedel:
44.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.9
HPA sample
nTPM
Classical monocyte nTPM: 27.9
Samples: 6
Max nTPM: 30.6
Min nTPM: 24.4
P10809_1003
24.4
P10809_1020
29.0
P10809_1039
30.6
P10809_1058
28.9
P10809_1080
28.3
P10809_1107
26.4
Intermediate monocyte nTPM: 29.7
Samples: 6
Max nTPM: 34.7
Min nTPM: 22.2
P10809_1004
22.2
P10809_1023
34.6
P10809_1042
34.7
P10809_1061
24.6
P10809_1081
31.6
P10809_1108
30.5
Non-classical monocyte nTPM: 35.9
Samples: 5
Max nTPM: 51.0
Min nTPM: 27.7
P10809_1005
27.7
P10809_1053
35.1
P10809_1072
51.0
P10809_1082
33.9
P10809_1109
31.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
86.4
Monaco sample
nTPM
Classical monocyte nTPM: 73.4
Samples: 4
Max nTPM: 88.0
Min nTPM: 64.5
RHH5313_R3680
70.5
RHH5221_R3593
88.0
RHH5250_R3622
70.6
RHH5279_R3651
64.5
Intermediate monocyte nTPM: 86.4
Samples: 4
Max nTPM: 109.5
Min nTPM: 58.8
RHH5314_R3681
58.8
RHH5222_R3594
109.5
RHH5251_R3623
76.1
RHH5280_R3652
101.2
Non-classical monocyte nTPM: 83.6
Samples: 4
Max nTPM: 101.1
Min nTPM: 76.5
RHH5315_R3682
76.5
RHH5223_R3595
101.1
RHH5252_R3624
77.9
RHH5281_R3653
78.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.6
Schmiedel sample id
TPM
Classical monocyte TPM: 29.6
Samples: 91
Max TPM: 44.1
Min TPM: 20.1
MONOCYTES_1
44.1
MONOCYTES_2
42.7
MONOCYTES_3
42.0
MONOCYTES_4
41.3
MONOCYTES_5
38.1
MONOCYTES_6
37.0
MONOCYTES_7
36.9
MONOCYTES_8
36.8
MONOCYTES_9
36.2
MONOCYTES_10
35.8
MONOCYTES_11
35.6
MONOCYTES_12
35.1
MONOCYTES_13
34.9
MONOCYTES_14
34.4
MONOCYTES_15
34.0
MONOCYTES_16
34.0
MONOCYTES_17
33.9
MONOCYTES_18
33.3
MONOCYTES_19
33.3
MONOCYTES_20
33.1
MONOCYTES_21
32.9
MONOCYTES_22
32.8
MONOCYTES_23
32.6
MONOCYTES_24
32.5
MONOCYTES_25
32.5
MONOCYTES_26
32.5
MONOCYTES_27
32.5
MONOCYTES_28
32.5
MONOCYTES_29
32.5
MONOCYTES_30
32.3
MONOCYTES_31
32.0
MONOCYTES_32
31.9
MONOCYTES_33
31.6
MONOCYTES_34
31.6
MONOCYTES_35
31.6
MONOCYTES_36
31.2
MONOCYTES_37
31.2
MONOCYTES_38
31.0
MONOCYTES_39
30.8
MONOCYTES_40
30.5
MONOCYTES_41
30.4
MONOCYTES_42
30.4
MONOCYTES_43
30.3
MONOCYTES_44
29.7
MONOCYTES_45
29.4
MONOCYTES_46
29.3
MONOCYTES_47
29.2
MONOCYTES_48
29.1
MONOCYTES_49
29.0
MONOCYTES_50
28.9
MONOCYTES_51
28.8
MONOCYTES_52
28.8
MONOCYTES_53
28.4
MONOCYTES_54
28.2
MONOCYTES_55
27.8
MONOCYTES_56
27.6
MONOCYTES_57
27.1
MONOCYTES_58
26.9
MONOCYTES_59
26.8
MONOCYTES_60
26.8
MONOCYTES_61
26.7
MONOCYTES_62
26.7
MONOCYTES_63
26.6
MONOCYTES_64
26.5
MONOCYTES_65
26.0
MONOCYTES_66
25.9
MONOCYTES_67
25.8
MONOCYTES_68
25.8
MONOCYTES_69
25.8
MONOCYTES_70
25.4
MONOCYTES_71
24.9
MONOCYTES_72
24.8
MONOCYTES_73
24.6
MONOCYTES_74
24.6
MONOCYTES_75
24.3
MONOCYTES_76
24.3
MONOCYTES_77
24.3
MONOCYTES_78
24.2
MONOCYTES_79
24.1
MONOCYTES_80
24.1
MONOCYTES_81
23.9
MONOCYTES_82
23.8
MONOCYTES_83
23.8
MONOCYTES_84
23.4
MONOCYTES_85
22.9
MONOCYTES_86
22.5
MONOCYTES_87
22.2
MONOCYTES_88
22.1
MONOCYTES_89
21.4
MONOCYTES_90
21.3
MONOCYTES_91
20.1
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Non-classical monocyte TPM: 44.6
Samples: 90
Max TPM: 67.6
Min TPM: 30.2
M2_1
67.6
M2_2
62.6
M2_3
61.4
M2_4
61.0
M2_5
59.2
M2_6
58.9
M2_7
58.2
M2_8
57.7
M2_9
56.6
M2_10
56.4
M2_11
53.9
M2_12
53.8
M2_13
53.0
M2_14
52.3
M2_15
52.3
M2_16
51.3
M2_17
51.1
M2_18
50.4
M2_19
50.1
M2_20
49.9
M2_21
49.1
M2_22
48.1
M2_23
48.1
M2_24
47.9
M2_25
47.8
M2_26
47.6
M2_27
47.5
M2_28
47.5
M2_29
47.4
M2_30
47.2
M2_31
47.2
M2_32
47.1
M2_33
46.3
M2_34
45.3
M2_35
45.1
M2_36
45.1
M2_37
44.9
M2_38
44.7
M2_39
44.7
M2_40
44.6
M2_41
44.5
M2_42
44.1
M2_43
44.0
M2_44
44.0
M2_45
43.4
M2_46
43.3
M2_47
43.1
M2_48
43.1
M2_49
43.0
M2_50
42.9
M2_51
42.7
M2_52
42.5
M2_53
42.4
M2_54
42.4
M2_55
42.2
M2_56
42.1
M2_57
41.8
M2_58
41.7
M2_59
40.7
M2_60
40.6
M2_61
40.5
M2_62
40.2
M2_63
40.2
M2_64
40.1
M2_65
40.0
M2_66
39.7
M2_67
39.2
M2_68
39.2
M2_69
39.2
M2_70
38.8
M2_71
38.6
M2_72
38.4
M2_73
38.2
M2_74
37.9
M2_75
37.9
M2_76
37.7
M2_77
37.4
M2_78
36.9
M2_79
36.9
M2_80
35.7
M2_81
35.7
M2_82
35.5
M2_83
35.1
M2_84
33.7
M2_85
33.5
M2_86
33.4
M2_87
32.5
M2_88
32.2
M2_89
30.6
M2_90
30.2
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