A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.0
nTPM
Monaco:
11.5
nTPM
Schmiedel:
47.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.0
HPA sample
nTPM
Memory B-cell nTPM: 0.8
Samples: 6
Max nTPM: 1.6
Min nTPM: 0.3
P10809_1017
0.8
P10809_1025
1.6
P10809_1044
0.3
P10809_1063
0.6
P10809_1092
0.9
P10809_1105
0.6
Naive B-cell nTPM: 1.0
Samples: 6
Max nTPM: 1.1
Min nTPM: 0.6
P10809_1011
0.9
P10809_1029
1.1
P10809_1048
0.6
P10809_1067
1.1
P10809_1091
1.1
P10809_1104
0.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 8.4
Samples: 4
Max nTPM: 9.4
Min nTPM: 7.1
RHH5310_R3677
8.1
RHH5218_R3590
7.1
RHH5247_R3619
9.4
RHH5276_R3648
9.1
Naive B-cell nTPM: 9.5
Samples: 4
Max nTPM: 11.2
Min nTPM: 7.8
RHH5308_R3675
8.0
RHH5216_R3588
10.9
RHH5245_R3617
11.2
RHH5274_R3646
7.8
Non-switched memory B-cell nTPM: 11.5
Samples: 4
Max nTPM: 14.3
Min nTPM: 8.7
RHH5309_R3676
12.8
RHH5217_R3589
14.3
RHH5246_R3618
10.3
RHH5275_R3647
8.7
Plasmablast nTPM: 4.0
Samples: 4
Max nTPM: 6.4
Min nTPM: 2.1
RHH5312_R3679
6.4
RHH5220_R3592
2.1
RHH5249_R3621
3.6
RHH5278_R3650
4.0
Switched memory B-cell nTPM: 10.1
Samples: 4
Max nTPM: 12.9
Min nTPM: 8.8
RHH5311_R3678
9.4
RHH5219_R3591
9.4
RHH5248_R3620
8.8
RHH5277_R3649
12.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.6
Schmiedel sample id
TPM
Naive B-cell TPM: 47.6
Samples: 91
Max TPM: 71.3
Min TPM: 26.5
B_CELL_NAIVE_1
71.3
B_CELL_NAIVE_2
62.7
B_CELL_NAIVE_3
62.5
B_CELL_NAIVE_4
61.1
B_CELL_NAIVE_5
61.0
B_CELL_NAIVE_6
59.6
B_CELL_NAIVE_7
58.3
B_CELL_NAIVE_8
57.0
B_CELL_NAIVE_9
57.0
B_CELL_NAIVE_10
55.2
B_CELL_NAIVE_11
54.8
B_CELL_NAIVE_12
54.6
B_CELL_NAIVE_13
54.0
B_CELL_NAIVE_14
53.9
B_CELL_NAIVE_15
53.8
B_CELL_NAIVE_16
53.7
B_CELL_NAIVE_17
53.1
B_CELL_NAIVE_18
53.0
B_CELL_NAIVE_19
52.7
B_CELL_NAIVE_20
52.6
B_CELL_NAIVE_21
51.9
B_CELL_NAIVE_22
51.7
B_CELL_NAIVE_23
51.6
B_CELL_NAIVE_24
51.4
B_CELL_NAIVE_25
51.4
B_CELL_NAIVE_26
50.9
B_CELL_NAIVE_27
50.5
B_CELL_NAIVE_28
50.4
B_CELL_NAIVE_29
50.1
B_CELL_NAIVE_30
50.1
B_CELL_NAIVE_31
49.8
B_CELL_NAIVE_32
49.7
B_CELL_NAIVE_33
49.5
B_CELL_NAIVE_34
49.5
B_CELL_NAIVE_35
49.2
B_CELL_NAIVE_36
49.1
B_CELL_NAIVE_37
48.9
B_CELL_NAIVE_38
48.9
B_CELL_NAIVE_39
48.6
B_CELL_NAIVE_40
48.6
B_CELL_NAIVE_41
48.1
B_CELL_NAIVE_42
47.8
B_CELL_NAIVE_43
47.7
B_CELL_NAIVE_44
47.6
B_CELL_NAIVE_45
47.6
B_CELL_NAIVE_46
47.6
B_CELL_NAIVE_47
47.3
B_CELL_NAIVE_48
47.1
B_CELL_NAIVE_49
47.0
B_CELL_NAIVE_50
46.9
B_CELL_NAIVE_51
46.8
B_CELL_NAIVE_52
46.7
B_CELL_NAIVE_53
46.4
B_CELL_NAIVE_54
45.9
B_CELL_NAIVE_55
45.9
B_CELL_NAIVE_56
45.1
B_CELL_NAIVE_57
45.0
B_CELL_NAIVE_58
44.5
B_CELL_NAIVE_59
44.5
B_CELL_NAIVE_60
44.4
B_CELL_NAIVE_61
44.3
B_CELL_NAIVE_62
44.2
B_CELL_NAIVE_63
44.1
B_CELL_NAIVE_64
44.1
B_CELL_NAIVE_65
43.7
B_CELL_NAIVE_66
43.4
B_CELL_NAIVE_67
43.1
B_CELL_NAIVE_68
42.9
B_CELL_NAIVE_69
42.8
B_CELL_NAIVE_70
42.2
B_CELL_NAIVE_71
42.1
B_CELL_NAIVE_72
42.0
B_CELL_NAIVE_73
42.0
B_CELL_NAIVE_74
41.7
B_CELL_NAIVE_75
41.5
B_CELL_NAIVE_76
41.5
B_CELL_NAIVE_77
41.4
B_CELL_NAIVE_78
41.1
B_CELL_NAIVE_79
41.1
B_CELL_NAIVE_80
40.9
B_CELL_NAIVE_81
40.9
B_CELL_NAIVE_82
40.8
B_CELL_NAIVE_83
40.4
B_CELL_NAIVE_84
39.6
B_CELL_NAIVE_85
39.4
B_CELL_NAIVE_86
38.8
B_CELL_NAIVE_87
36.6
B_CELL_NAIVE_88
36.1
B_CELL_NAIVE_89
35.1
B_CELL_NAIVE_90
29.4
B_CELL_NAIVE_91
26.5
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