A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.3
nTPM
Monaco:
13.9
nTPM
Schmiedel:
113.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.3
HPA sample
nTPM
Classical monocyte nTPM: 1.3
Samples: 6
Max nTPM: 1.8
Min nTPM: 0.9
P10809_1003
1.8
P10809_1020
1.7
P10809_1039
1.5
P10809_1058
0.9
P10809_1080
1.1
P10809_1107
0.9
Intermediate monocyte nTPM: 1.7
Samples: 6
Max nTPM: 2.6
Min nTPM: 0.6
P10809_1004
2.5
P10809_1023
2.6
P10809_1042
0.6
P10809_1061
1.8
P10809_1081
1.3
P10809_1108
1.4
Non-classical monocyte nTPM: 2.3
Samples: 5
Max nTPM: 2.7
Min nTPM: 2.0
P10809_1005
2.0
P10809_1053
2.7
P10809_1072
2.7
P10809_1082
2.2
P10809_1109
2.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.9
Monaco sample
nTPM
Classical monocyte nTPM: 9.4
Samples: 4
Max nTPM: 13.3
Min nTPM: 5.7
RHH5313_R3680
9.7
RHH5221_R3593
8.8
RHH5250_R3622
5.7
RHH5279_R3651
13.3
Intermediate monocyte nTPM: 12.0
Samples: 4
Max nTPM: 14.7
Min nTPM: 9.4
RHH5314_R3681
11.6
RHH5222_R3594
9.4
RHH5251_R3623
12.4
RHH5280_R3652
14.7
Non-classical monocyte nTPM: 13.9
Samples: 4
Max nTPM: 18.5
Min nTPM: 10.9
RHH5315_R3682
12.1
RHH5223_R3595
10.9
RHH5252_R3624
18.5
RHH5281_R3653
14.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
113.2
Schmiedel sample id
TPM
Classical monocyte TPM: 44.3
Samples: 91
Max TPM: 55.8
Min TPM: 30.7
MONOCYTES_1
55.8
MONOCYTES_2
55.5
MONOCYTES_3
54.2
MONOCYTES_4
54.1
MONOCYTES_5
53.5
MONOCYTES_6
52.8
MONOCYTES_7
52.3
MONOCYTES_8
51.6
MONOCYTES_9
51.4
MONOCYTES_10
51.4
MONOCYTES_11
51.3
MONOCYTES_12
51.3
MONOCYTES_13
50.8
MONOCYTES_14
50.8
MONOCYTES_15
50.7
MONOCYTES_16
50.6
MONOCYTES_17
50.5
MONOCYTES_18
50.5
MONOCYTES_19
50.4
MONOCYTES_20
50.3
MONOCYTES_21
50.3
MONOCYTES_22
50.2
MONOCYTES_23
50.1
MONOCYTES_24
49.8
MONOCYTES_25
49.7
MONOCYTES_26
48.5
MONOCYTES_27
48.5
MONOCYTES_28
48.5
MONOCYTES_29
48.1
MONOCYTES_30
47.9
MONOCYTES_31
47.7
MONOCYTES_32
47.0
MONOCYTES_33
46.6
MONOCYTES_34
46.5
MONOCYTES_35
46.3
MONOCYTES_36
46.2
MONOCYTES_37
46.2
MONOCYTES_38
46.0
MONOCYTES_39
46.0
MONOCYTES_40
45.6
MONOCYTES_41
45.6
MONOCYTES_42
45.2
MONOCYTES_43
45.1
MONOCYTES_44
45.0
MONOCYTES_45
44.8
MONOCYTES_46
44.7
MONOCYTES_47
44.3
MONOCYTES_48
43.4
MONOCYTES_49
43.3
MONOCYTES_50
43.2
MONOCYTES_51
43.1
MONOCYTES_52
43.1
MONOCYTES_53
43.1
MONOCYTES_54
42.7
MONOCYTES_55
42.7
MONOCYTES_56
42.7
MONOCYTES_57
42.4
MONOCYTES_58
42.3
MONOCYTES_59
41.9
MONOCYTES_60
41.6
MONOCYTES_61
41.4
MONOCYTES_62
41.2
MONOCYTES_63
40.5
MONOCYTES_64
40.5
MONOCYTES_65
40.4
MONOCYTES_66
40.4
MONOCYTES_67
40.3
MONOCYTES_68
40.1
MONOCYTES_69
39.9
MONOCYTES_70
39.3
MONOCYTES_71
39.3
MONOCYTES_72
39.3
MONOCYTES_73
39.2
MONOCYTES_74
39.1
MONOCYTES_75
38.9
MONOCYTES_76
38.6
MONOCYTES_77
38.3
MONOCYTES_78
38.0
MONOCYTES_79
37.0
MONOCYTES_80
36.8
MONOCYTES_81
36.7
MONOCYTES_82
35.6
MONOCYTES_83
35.4
MONOCYTES_84
35.0
MONOCYTES_85
34.4
MONOCYTES_86
34.1
MONOCYTES_87
34.0
MONOCYTES_88
33.9
MONOCYTES_89
33.6
MONOCYTES_90
31.8
MONOCYTES_91
30.7
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Non-classical monocyte TPM: 113.2
Samples: 90
Max TPM: 162.5
Min TPM: 75.6
M2_1
162.5
M2_2
157.8
M2_3
156.5
M2_4
155.0
M2_5
151.7
M2_6
150.1
M2_7
148.0
M2_8
147.7
M2_9
146.6
M2_10
141.4
M2_11
141.0
M2_12
140.3
M2_13
138.4
M2_14
138.4
M2_15
137.7
M2_16
136.6
M2_17
134.4
M2_18
134.3
M2_19
131.8
M2_20
128.8
M2_21
127.5
M2_22
124.0
M2_23
124.0
M2_24
124.0
M2_25
123.8
M2_26
123.5
M2_27
122.4
M2_28
120.6
M2_29
119.9
M2_30
119.2
M2_31
117.7
M2_32
117.4
M2_33
116.5
M2_34
116.4
M2_35
115.6
M2_36
114.2
M2_37
113.8
M2_38
113.5
M2_39
111.9
M2_40
111.8
M2_41
111.5
M2_42
111.4
M2_43
110.3
M2_44
110.0
M2_45
109.8
M2_46
109.0
M2_47
108.5
M2_48
107.4
M2_49
106.5
M2_50
106.3
M2_51
106.3
M2_52
106.0
M2_53
105.8
M2_54
105.6
M2_55
105.5
M2_56
104.7
M2_57
103.7
M2_58
103.6
M2_59
102.7
M2_60
102.7
M2_61
101.4
M2_62
100.7
M2_63
100.1
M2_64
99.6
M2_65
99.5
M2_66
99.4
M2_67
99.1
M2_68
97.9
M2_69
97.1
M2_70
97.0
M2_71
96.3
M2_72
96.3
M2_73
94.9
M2_74
94.9
M2_75
94.5
M2_76
94.4
M2_77
93.8
M2_78
93.4
M2_79
92.8
M2_80
92.4
M2_81
92.3
M2_82
91.5
M2_83
90.1
M2_84
88.3
M2_85
85.8
M2_86
84.7
M2_87
84.7
M2_88
84.3
M2_89
82.2
M2_90
75.6
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