A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.8
nTPM
Monaco:
43.1
nTPM
Schmiedel:
66.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.8
HPA sample
nTPM
NK-cell nTPM: 12.9
Samples: 6
Max nTPM: 19.1
Min nTPM: 5.3
P10809_1013
15.3
P10809_1033
10.1
P10809_1052
5.3
P10809_1071
12.4
P10809_1093
19.1
P10809_1103
14.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.1
Monaco sample
nTPM
NK-cell nTPM: 43.1
Samples: 4
Max nTPM: 51.7
Min nTPM: 37.6
RHH5316_R3683
37.6
RHH5224_R3596
51.7
RHH5253_R3625
39.4
RHH5282_R3654
43.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
66.4
Schmiedel sample id
TPM
NK-cell TPM: 66.4
Samples: 90
Max TPM: 101.4
Min TPM: 49.4
NK_1
101.4
NK_2
91.1
NK_3
90.9
NK_4
88.7
NK_5
88.1
NK_6
87.9
NK_7
80.0
NK_8
78.2
NK_9
76.5
NK_10
76.4
NK_11
76.3
NK_12
75.8
NK_13
75.2
NK_14
75.2
NK_15
74.4
NK_16
74.1
NK_17
73.9
NK_18
73.9
NK_19
73.8
NK_20
73.8
NK_21
73.7
NK_22
73.1
NK_23
72.6
NK_24
72.5
NK_25
71.8
NK_26
71.4
NK_27
70.8
NK_28
70.3
NK_29
70.2
NK_30
69.3
NK_31
68.7
NK_32
67.8
NK_33
67.6
NK_34
67.5
NK_35
67.4
NK_36
67.3
NK_37
67.1
NK_38
66.9
NK_39
66.9
NK_40
66.7
NK_41
66.6
NK_42
66.5
NK_43
66.1
NK_44
65.7
NK_45
65.6
NK_46
65.6
NK_47
65.4
NK_48
64.6
NK_49
64.4
NK_50
63.8
NK_51
63.8
NK_52
63.5
NK_53
63.4
NK_54
63.4
NK_55
63.0
NK_56
62.9
NK_57
61.9
NK_58
61.8
NK_59
61.7
NK_60
61.6
NK_61
61.6
NK_62
61.5
NK_63
61.3
NK_64
61.0
NK_65
60.9
NK_66
59.7
NK_67
59.6
NK_68
59.5
NK_69
59.3
NK_70
59.1
NK_71
59.1
NK_72
59.0
NK_73
58.2
NK_74
58.0
NK_75
57.8
NK_76
57.7
NK_77
57.4
NK_78
56.9
NK_79
55.9
NK_80
55.7
NK_81
54.2
NK_82
54.1
NK_83
53.2
NK_84
53.1
NK_85
52.8
NK_86
52.7
NK_87
51.8
NK_88
51.5
NK_89
51.2
NK_90
49.4
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