A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.7
nTPM
Monaco:
61.2
nTPM
Schmiedel:
76.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.7
HPA sample
nTPM
Classical monocyte nTPM: 10.3
Samples: 6
Max nTPM: 14.1
Min nTPM: 5.7
P10809_1003
14.1
P10809_1020
9.1
P10809_1039
5.7
P10809_1058
10.5
P10809_1080
12.2
P10809_1107
10.2
Intermediate monocyte nTPM: 12.7
Samples: 6
Max nTPM: 13.4
Min nTPM: 11.5
P10809_1004
11.5
P10809_1023
12.8
P10809_1042
13.4
P10809_1061
12.5
P10809_1081
13.3
P10809_1108
12.7
Non-classical monocyte nTPM: 11.4
Samples: 5
Max nTPM: 13.6
Min nTPM: 9.3
P10809_1005
12.7
P10809_1053
9.5
P10809_1072
11.9
P10809_1082
13.6
P10809_1109
9.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.2
Monaco sample
nTPM
Classical monocyte nTPM: 53.2
Samples: 4
Max nTPM: 59.9
Min nTPM: 47.4
RHH5313_R3680
47.4
RHH5221_R3593
50.3
RHH5250_R3622
55.1
RHH5279_R3651
59.9
Intermediate monocyte nTPM: 54.5
Samples: 4
Max nTPM: 62.5
Min nTPM: 45.1
RHH5314_R3681
49.2
RHH5222_R3594
62.5
RHH5251_R3623
45.1
RHH5280_R3652
61.2
Non-classical monocyte nTPM: 61.2
Samples: 4
Max nTPM: 84.5
Min nTPM: 51.4
RHH5315_R3682
54.7
RHH5223_R3595
84.5
RHH5252_R3624
51.4
RHH5281_R3653
54.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
76.8
Schmiedel sample id
TPM
Classical monocyte TPM: 63.7
Samples: 91
Max TPM: 80.7
Min TPM: 49.5
MONOCYTES_1
80.7
MONOCYTES_2
80.1
MONOCYTES_3
77.8
MONOCYTES_4
77.5
MONOCYTES_5
77.2
MONOCYTES_6
76.9
MONOCYTES_7
75.8
MONOCYTES_8
75.8
MONOCYTES_9
75.6
MONOCYTES_10
74.5
MONOCYTES_11
74.0
MONOCYTES_12
73.9
MONOCYTES_13
73.7
MONOCYTES_14
73.3
MONOCYTES_15
72.8
MONOCYTES_16
71.8
MONOCYTES_17
71.4
MONOCYTES_18
71.2
MONOCYTES_19
70.5
MONOCYTES_20
70.2
MONOCYTES_21
69.9
MONOCYTES_22
69.7
MONOCYTES_23
69.5
MONOCYTES_24
68.3
MONOCYTES_25
68.2
MONOCYTES_26
67.9
MONOCYTES_27
67.8
MONOCYTES_28
66.8
MONOCYTES_29
66.6
MONOCYTES_30
65.9
MONOCYTES_31
65.5
MONOCYTES_32
65.1
MONOCYTES_33
65.1
MONOCYTES_34
65.0
MONOCYTES_35
65.0
MONOCYTES_36
64.4
MONOCYTES_37
64.1
MONOCYTES_38
64.0
MONOCYTES_39
64.0
MONOCYTES_40
63.6
MONOCYTES_41
63.5
MONOCYTES_42
63.4
MONOCYTES_43
63.1
MONOCYTES_44
63.1
MONOCYTES_45
63.0
MONOCYTES_46
62.8
MONOCYTES_47
62.6
MONOCYTES_48
62.6
MONOCYTES_49
62.4
MONOCYTES_50
62.1
MONOCYTES_51
61.5
MONOCYTES_52
61.0
MONOCYTES_53
61.0
MONOCYTES_54
60.3
MONOCYTES_55
60.1
MONOCYTES_56
59.9
MONOCYTES_57
59.9
MONOCYTES_58
59.7
MONOCYTES_59
59.7
MONOCYTES_60
59.6
MONOCYTES_61
59.1
MONOCYTES_62
58.9
MONOCYTES_63
58.9
MONOCYTES_64
58.8
MONOCYTES_65
58.6
MONOCYTES_66
58.6
MONOCYTES_67
58.1
MONOCYTES_68
58.1
MONOCYTES_69
58.0
MONOCYTES_70
58.0
MONOCYTES_71
57.8
MONOCYTES_72
57.6
MONOCYTES_73
57.6
MONOCYTES_74
57.4
MONOCYTES_75
57.4
MONOCYTES_76
57.2
MONOCYTES_77
57.2
MONOCYTES_78
56.5
MONOCYTES_79
55.5
MONOCYTES_80
55.4
MONOCYTES_81
55.4
MONOCYTES_82
55.1
MONOCYTES_83
54.9
MONOCYTES_84
54.9
MONOCYTES_85
54.3
MONOCYTES_86
54.3
MONOCYTES_87
54.1
MONOCYTES_88
53.3
MONOCYTES_89
50.2
MONOCYTES_90
50.1
MONOCYTES_91
49.5
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Non-classical monocyte TPM: 76.8
Samples: 90
Max TPM: 105.5
Min TPM: 52.2
M2_1
105.5
M2_2
104.8
M2_3
103.6
M2_4
103.4
M2_5
99.4
M2_6
97.9
M2_7
92.7
M2_8
92.3
M2_9
92.2
M2_10
91.9
M2_11
90.8
M2_12
90.2
M2_13
89.9
M2_14
89.8
M2_15
89.4
M2_16
89.2
M2_17
87.4
M2_18
85.9
M2_19
85.4
M2_20
84.9
M2_21
83.9
M2_22
83.7
M2_23
82.6
M2_24
82.0
M2_25
81.9
M2_26
81.7
M2_27
81.2
M2_28
80.9
M2_29
80.6
M2_30
80.6
M2_31
79.6
M2_32
79.0
M2_33
78.9
M2_34
78.8
M2_35
78.7
M2_36
78.5
M2_37
78.0
M2_38
77.6
M2_39
77.3
M2_40
77.1
M2_41
76.6
M2_42
76.5
M2_43
76.5
M2_44
76.1
M2_45
75.5
M2_46
75.4
M2_47
75.4
M2_48
75.3
M2_49
75.2
M2_50
75.1
M2_51
74.7
M2_52
74.7
M2_53
74.6
M2_54
74.2
M2_55
73.3
M2_56
72.9
M2_57
72.8
M2_58
72.8
M2_59
72.2
M2_60
72.2
M2_61
71.7
M2_62
71.7
M2_63
71.6
M2_64
70.3
M2_65
70.2
M2_66
68.6
M2_67
68.1
M2_68
67.9
M2_69
67.8
M2_70
67.7
M2_71
67.5
M2_72
67.5
M2_73
67.4
M2_74
67.4
M2_75
67.0
M2_76
66.2
M2_77
65.4
M2_78
65.3
M2_79
65.2
M2_80
65.0
M2_81
64.0
M2_82
63.0
M2_83
60.4
M2_84
60.2
M2_85
60.0
M2_86
59.8
M2_87
58.5
M2_88
58.5
M2_89
57.4
M2_90
52.2
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