A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.8
nTPM
Monaco:
66.8
nTPM
Schmiedel:
34.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.8
HPA sample
nTPM
Memory B-cell nTPM: 7.5
Samples: 6
Max nTPM: 14.3
Min nTPM: 0.7
P10809_1017
12.5
P10809_1025
14.3
P10809_1044
0.7
P10809_1063
3.2
P10809_1092
6.4
P10809_1105
8.1
Naive B-cell nTPM: 8.8
Samples: 6
Max nTPM: 10.6
Min nTPM: 4.7
P10809_1011
10.6
P10809_1029
8.5
P10809_1048
9.9
P10809_1067
4.7
P10809_1091
9.6
P10809_1104
9.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
66.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 63.2
Samples: 4
Max nTPM: 93.4
Min nTPM: 46.4
RHH5310_R3677
64.6
RHH5218_R3590
93.4
RHH5247_R3619
46.4
RHH5276_R3648
48.4
Naive B-cell nTPM: 62.1
Samples: 4
Max nTPM: 73.1
Min nTPM: 46.0
RHH5308_R3675
58.1
RHH5216_R3588
71.1
RHH5245_R3617
73.1
RHH5274_R3646
46.0
Non-switched memory B-cell nTPM: 64.3
Samples: 4
Max nTPM: 76.0
Min nTPM: 43.5
RHH5309_R3676
76.0
RHH5217_R3589
75.6
RHH5246_R3618
43.5
RHH5275_R3647
62.1
Plasmablast nTPM: 45.8
Samples: 4
Max nTPM: 56.4
Min nTPM: 37.9
RHH5312_R3679
56.4
RHH5220_R3592
47.1
RHH5249_R3621
41.8
RHH5278_R3650
37.9
Switched memory B-cell nTPM: 66.8
Samples: 4
Max nTPM: 82.4
Min nTPM: 58.5
RHH5311_R3678
82.4
RHH5219_R3591
58.5
RHH5248_R3620
67.7
RHH5277_R3649
58.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.5
Schmiedel sample id
TPM
Naive B-cell TPM: 34.5
Samples: 91
Max TPM: 59.7
Min TPM: 8.3
B_CELL_NAIVE_1
59.7
B_CELL_NAIVE_2
57.2
B_CELL_NAIVE_3
55.5
B_CELL_NAIVE_4
55.2
B_CELL_NAIVE_5
54.2
B_CELL_NAIVE_6
54.2
B_CELL_NAIVE_7
53.4
B_CELL_NAIVE_8
50.8
B_CELL_NAIVE_9
50.0
B_CELL_NAIVE_10
48.8
B_CELL_NAIVE_11
48.5
B_CELL_NAIVE_12
47.7
B_CELL_NAIVE_13
47.5
B_CELL_NAIVE_14
47.4
B_CELL_NAIVE_15
46.0
B_CELL_NAIVE_16
45.9
B_CELL_NAIVE_17
45.7
B_CELL_NAIVE_18
45.5
B_CELL_NAIVE_19
45.1
B_CELL_NAIVE_20
44.8
B_CELL_NAIVE_21
44.6
B_CELL_NAIVE_22
44.6
B_CELL_NAIVE_23
43.3
B_CELL_NAIVE_24
43.2
B_CELL_NAIVE_25
41.0
B_CELL_NAIVE_26
40.8
B_CELL_NAIVE_27
40.6
B_CELL_NAIVE_28
40.5
B_CELL_NAIVE_29
40.4
B_CELL_NAIVE_30
40.4
B_CELL_NAIVE_31
40.3
B_CELL_NAIVE_32
40.2
B_CELL_NAIVE_33
40.1
B_CELL_NAIVE_34
39.5
B_CELL_NAIVE_35
39.3
B_CELL_NAIVE_36
39.2
B_CELL_NAIVE_37
38.6
B_CELL_NAIVE_38
38.2
B_CELL_NAIVE_39
38.2
B_CELL_NAIVE_40
37.7
B_CELL_NAIVE_41
37.6
B_CELL_NAIVE_42
35.8
B_CELL_NAIVE_43
35.7
B_CELL_NAIVE_44
35.7
B_CELL_NAIVE_45
35.6
B_CELL_NAIVE_46
35.0
B_CELL_NAIVE_47
34.2
B_CELL_NAIVE_48
33.6
B_CELL_NAIVE_49
33.3
B_CELL_NAIVE_50
33.3
B_CELL_NAIVE_51
33.2
B_CELL_NAIVE_52
33.1
B_CELL_NAIVE_53
32.9
B_CELL_NAIVE_54
32.8
B_CELL_NAIVE_55
32.5
B_CELL_NAIVE_56
32.5
B_CELL_NAIVE_57
31.9
B_CELL_NAIVE_58
31.0
B_CELL_NAIVE_59
30.8
B_CELL_NAIVE_60
30.5
B_CELL_NAIVE_61
29.7
B_CELL_NAIVE_62
29.6
B_CELL_NAIVE_63
29.4
B_CELL_NAIVE_64
29.3
B_CELL_NAIVE_65
29.3
B_CELL_NAIVE_66
29.0
B_CELL_NAIVE_67
28.7
B_CELL_NAIVE_68
28.6
B_CELL_NAIVE_69
28.1
B_CELL_NAIVE_70
27.7
B_CELL_NAIVE_71
24.9
B_CELL_NAIVE_72
24.6
B_CELL_NAIVE_73
23.8
B_CELL_NAIVE_74
23.7
B_CELL_NAIVE_75
22.1
B_CELL_NAIVE_76
22.0
B_CELL_NAIVE_77
21.0
B_CELL_NAIVE_78
20.9
B_CELL_NAIVE_79
19.3
B_CELL_NAIVE_80
19.1
B_CELL_NAIVE_81
17.6
B_CELL_NAIVE_82
17.0
B_CELL_NAIVE_83
16.0
B_CELL_NAIVE_84
15.8
B_CELL_NAIVE_85
15.0
B_CELL_NAIVE_86
14.7
B_CELL_NAIVE_87
13.8
B_CELL_NAIVE_88
10.5
B_CELL_NAIVE_89
9.7
B_CELL_NAIVE_90
9.2
B_CELL_NAIVE_91
8.3
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