A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
34.4
nTPM
Monaco:
216.5
nTPM
Schmiedel:
97.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.4
HPA sample
nTPM
Classical monocyte nTPM: 34.4
Samples: 6
Max nTPM: 72.7
Min nTPM: 20.3
P10809_1003
72.7
P10809_1020
33.1
P10809_1039
20.3
P10809_1058
20.8
P10809_1080
26.5
P10809_1107
32.9
Intermediate monocyte nTPM: 27.2
Samples: 6
Max nTPM: 41.5
Min nTPM: 18.4
P10809_1004
41.5
P10809_1023
32.7
P10809_1042
20.2
P10809_1061
30.0
P10809_1081
20.5
P10809_1108
18.4
Non-classical monocyte nTPM: 25.2
Samples: 5
Max nTPM: 44.7
Min nTPM: 18.1
P10809_1005
44.7
P10809_1053
19.9
P10809_1072
24.1
P10809_1082
18.1
P10809_1109
19.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
216.5
Monaco sample
nTPM
Classical monocyte nTPM: 213.4
Samples: 4
Max nTPM: 234.8
Min nTPM: 170.6
RHH5313_R3680
224.9
RHH5221_R3593
234.8
RHH5250_R3622
223.3
RHH5279_R3651
170.6
Intermediate monocyte nTPM: 216.5
Samples: 4
Max nTPM: 305.4
Min nTPM: 153.2
RHH5314_R3681
195.5
RHH5222_R3594
305.4
RHH5251_R3623
153.2
RHH5280_R3652
211.9
Non-classical monocyte nTPM: 208.9
Samples: 4
Max nTPM: 244.5
Min nTPM: 164.1
RHH5315_R3682
183.3
RHH5223_R3595
244.5
RHH5252_R3624
164.1
RHH5281_R3653
243.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
97.8
Schmiedel sample id
TPM
Classical monocyte TPM: 97.8
Samples: 91
Max TPM: 143.4
Min TPM: 50.6
MONOCYTES_1
143.4
MONOCYTES_2
142.8
MONOCYTES_3
142.3
MONOCYTES_4
139.4
MONOCYTES_5
134.9
MONOCYTES_6
128.8
MONOCYTES_7
128.5
MONOCYTES_8
128.0
MONOCYTES_9
127.5
MONOCYTES_10
125.9
MONOCYTES_11
123.8
MONOCYTES_12
123.4
MONOCYTES_13
121.8
MONOCYTES_14
120.9
MONOCYTES_15
120.4
MONOCYTES_16
119.0
MONOCYTES_17
118.3
MONOCYTES_18
117.2
MONOCYTES_19
116.4
MONOCYTES_20
116.3
MONOCYTES_21
116.1
MONOCYTES_22
115.5
MONOCYTES_23
115.3
MONOCYTES_24
115.0
MONOCYTES_25
114.7
MONOCYTES_26
114.6
MONOCYTES_27
114.2
MONOCYTES_28
113.5
MONOCYTES_29
112.6
MONOCYTES_30
110.9
MONOCYTES_31
110.8
MONOCYTES_32
110.7
MONOCYTES_33
109.1
MONOCYTES_34
108.3
MONOCYTES_35
107.3
MONOCYTES_36
106.9
MONOCYTES_37
106.8
MONOCYTES_38
105.1
MONOCYTES_39
104.0
MONOCYTES_40
102.9
MONOCYTES_41
102.7
MONOCYTES_42
102.1
MONOCYTES_43
99.5
MONOCYTES_44
98.1
MONOCYTES_45
96.5
MONOCYTES_46
95.8
MONOCYTES_47
95.6
MONOCYTES_48
95.6
MONOCYTES_49
95.5
MONOCYTES_50
95.4
MONOCYTES_51
94.8
MONOCYTES_52
93.6
MONOCYTES_53
93.5
MONOCYTES_54
93.1
MONOCYTES_55
93.0
MONOCYTES_56
92.9
MONOCYTES_57
91.8
MONOCYTES_58
91.6
MONOCYTES_59
89.8
MONOCYTES_60
88.7
MONOCYTES_61
88.1
MONOCYTES_62
85.8
MONOCYTES_63
85.3
MONOCYTES_64
83.1
MONOCYTES_65
82.5
MONOCYTES_66
82.2
MONOCYTES_67
82.2
MONOCYTES_68
81.6
MONOCYTES_69
80.8
MONOCYTES_70
80.2
MONOCYTES_71
79.9
MONOCYTES_72
79.6
MONOCYTES_73
79.4
MONOCYTES_74
78.2
MONOCYTES_75
75.5
MONOCYTES_76
74.9
MONOCYTES_77
71.7
MONOCYTES_78
71.4
MONOCYTES_79
70.8
MONOCYTES_80
69.8
MONOCYTES_81
68.3
MONOCYTES_82
66.1
MONOCYTES_83
64.6
MONOCYTES_84
62.7
MONOCYTES_85
60.5
MONOCYTES_86
59.5
MONOCYTES_87
59.4
MONOCYTES_88
58.8
MONOCYTES_89
58.3
MONOCYTES_90
51.7
MONOCYTES_91
50.6
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Non-classical monocyte TPM: 94.0
Samples: 90
Max TPM: 162.7
Min TPM: 34.2
M2_1
162.7
M2_2
153.7
M2_3
144.4
M2_4
143.2
M2_5
142.7
M2_6
141.1
M2_7
140.6
M2_8
139.5
M2_9
138.7
M2_10
136.5
M2_11
134.4
M2_12
133.3
M2_13
131.0
M2_14
129.2
M2_15
128.8
M2_16
125.4
M2_17
123.2
M2_18
123.0
M2_19
121.0
M2_20
118.1
M2_21
115.7
M2_22
115.6
M2_23
111.8
M2_24
111.5
M2_25
111.2
M2_26
109.9
M2_27
108.9
M2_28
108.5
M2_29
105.4
M2_30
105.1
M2_31
104.8
M2_32
104.3
M2_33
104.1
M2_34
103.5
M2_35
103.4
M2_36
103.2
M2_37
102.6
M2_38
102.3
M2_39
102.1
M2_40
101.9
M2_41
100.6
M2_42
99.7
M2_43
97.7
M2_44
97.3
M2_45
97.2
M2_46
96.9
M2_47
96.8
M2_48
95.9
M2_49
95.8
M2_50
93.5
M2_51
93.5
M2_52
92.8
M2_53
92.3
M2_54
91.7
M2_55
90.6
M2_56
88.5
M2_57
85.1
M2_58
83.9
M2_59
80.5
M2_60
78.8
M2_61
77.5
M2_62
76.9
M2_63
76.8
M2_64
76.2
M2_65
75.9
M2_66
72.2
M2_67
70.2
M2_68
69.4
M2_69
69.3
M2_70
69.0
M2_71
68.8
M2_72
65.7
M2_73
64.6
M2_74
61.7
M2_75
61.7
M2_76
60.9
M2_77
59.3
M2_78
58.1
M2_79
57.1
M2_80
56.4
M2_81
49.1
M2_82
48.8
M2_83
45.1
M2_84
43.6
M2_85
43.2
M2_86
41.2
M2_87
39.8
M2_88
37.2
M2_89
35.1
M2_90
34.2
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