A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
39.8
nTPM
Monaco:
281.0
nTPM
Schmiedel:
28.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.8
HPA sample
nTPM
Memory B-cell nTPM: 39.8
Samples: 6
Max nTPM: 47.0
Min nTPM: 35.4
P10809_1017
35.4
P10809_1025
47.0
P10809_1044
38.2
P10809_1063
38.4
P10809_1092
43.1
P10809_1105
36.9
Naive B-cell nTPM: 30.6
Samples: 6
Max nTPM: 71.1
Min nTPM: 18.1
P10809_1011
18.1
P10809_1029
23.9
P10809_1048
71.1
P10809_1067
25.7
P10809_1091
23.9
P10809_1104
21.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
281.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 100.1
Samples: 4
Max nTPM: 151.0
Min nTPM: 71.4
RHH5310_R3677
151.0
RHH5218_R3590
95.4
RHH5247_R3619
71.4
RHH5276_R3648
82.7
Naive B-cell nTPM: 82.1
Samples: 4
Max nTPM: 119.9
Min nTPM: 59.7
RHH5308_R3675
76.4
RHH5216_R3588
119.9
RHH5245_R3617
59.7
RHH5274_R3646
72.5
Non-switched memory B-cell nTPM: 89.0
Samples: 4
Max nTPM: 115.4
Min nTPM: 63.3
RHH5309_R3676
115.4
RHH5217_R3589
98.0
RHH5246_R3618
79.3
RHH5275_R3647
63.3
Plasmablast nTPM: 281.0
Samples: 4
Max nTPM: 323.7
Min nTPM: 257.8
RHH5312_R3679
257.8
RHH5220_R3592
323.7
RHH5249_R3621
266.2
RHH5278_R3650
276.2
Switched memory B-cell nTPM: 122.0
Samples: 4
Max nTPM: 163.4
Min nTPM: 75.6
RHH5311_R3678
118.4
RHH5219_R3591
163.4
RHH5248_R3620
130.7
RHH5277_R3649
75.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.6
Schmiedel sample id
TPM
Naive B-cell TPM: 28.6
Samples: 91
Max TPM: 58.7
Min TPM: 12.4
B_CELL_NAIVE_1
58.7
B_CELL_NAIVE_2
56.9
B_CELL_NAIVE_3
56.2
B_CELL_NAIVE_4
49.9
B_CELL_NAIVE_5
49.7
B_CELL_NAIVE_6
45.7
B_CELL_NAIVE_7
41.6
B_CELL_NAIVE_8
41.2
B_CELL_NAIVE_9
40.6
B_CELL_NAIVE_10
39.7
B_CELL_NAIVE_11
38.9
B_CELL_NAIVE_12
37.4
B_CELL_NAIVE_13
34.8
B_CELL_NAIVE_14
34.1
B_CELL_NAIVE_15
34.0
B_CELL_NAIVE_16
33.8
B_CELL_NAIVE_17
33.5
B_CELL_NAIVE_18
33.3
B_CELL_NAIVE_19
33.2
B_CELL_NAIVE_20
32.9
B_CELL_NAIVE_21
32.8
B_CELL_NAIVE_22
32.8
B_CELL_NAIVE_23
32.6
B_CELL_NAIVE_24
32.3
B_CELL_NAIVE_25
32.2
B_CELL_NAIVE_26
32.1
B_CELL_NAIVE_27
32.0
B_CELL_NAIVE_28
31.6
B_CELL_NAIVE_29
30.8
B_CELL_NAIVE_30
30.7
B_CELL_NAIVE_31
30.7
B_CELL_NAIVE_32
30.6
B_CELL_NAIVE_33
30.3
B_CELL_NAIVE_34
30.1
B_CELL_NAIVE_35
29.9
B_CELL_NAIVE_36
29.3
B_CELL_NAIVE_37
29.0
B_CELL_NAIVE_38
28.6
B_CELL_NAIVE_39
28.5
B_CELL_NAIVE_40
27.7
B_CELL_NAIVE_41
27.7
B_CELL_NAIVE_42
27.4
B_CELL_NAIVE_43
26.9
B_CELL_NAIVE_44
26.6
B_CELL_NAIVE_45
26.4
B_CELL_NAIVE_46
26.4
B_CELL_NAIVE_47
26.1
B_CELL_NAIVE_48
26.1
B_CELL_NAIVE_49
26.0
B_CELL_NAIVE_50
26.0
B_CELL_NAIVE_51
25.1
B_CELL_NAIVE_52
25.0
B_CELL_NAIVE_53
25.0
B_CELL_NAIVE_54
24.9
B_CELL_NAIVE_55
24.7
B_CELL_NAIVE_56
24.6
B_CELL_NAIVE_57
24.3
B_CELL_NAIVE_58
24.0
B_CELL_NAIVE_59
23.9
B_CELL_NAIVE_60
23.9
B_CELL_NAIVE_61
23.7
B_CELL_NAIVE_62
23.7
B_CELL_NAIVE_63
23.6
B_CELL_NAIVE_64
23.6
B_CELL_NAIVE_65
23.6
B_CELL_NAIVE_66
23.2
B_CELL_NAIVE_67
23.2
B_CELL_NAIVE_68
23.2
B_CELL_NAIVE_69
23.2
B_CELL_NAIVE_70
23.1
B_CELL_NAIVE_71
22.7
B_CELL_NAIVE_72
22.5
B_CELL_NAIVE_73
22.1
B_CELL_NAIVE_74
21.7
B_CELL_NAIVE_75
21.6
B_CELL_NAIVE_76
20.9
B_CELL_NAIVE_77
20.9
B_CELL_NAIVE_78
20.9
B_CELL_NAIVE_79
20.6
B_CELL_NAIVE_80
20.3
B_CELL_NAIVE_81
20.2
B_CELL_NAIVE_82
19.7
B_CELL_NAIVE_83
19.6
B_CELL_NAIVE_84
19.6
B_CELL_NAIVE_85
19.6
B_CELL_NAIVE_86
19.3
B_CELL_NAIVE_87
18.5
B_CELL_NAIVE_88
18.4
B_CELL_NAIVE_89
18.1
B_CELL_NAIVE_90
17.5
B_CELL_NAIVE_91
12.4
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