A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
261.7
nTPM
Monaco:
619.7
nTPM
Schmiedel:
319.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
261.7
HPA sample
nTPM
Classical monocyte nTPM: 104.4
Samples: 6
Max nTPM: 148.4
Min nTPM: 82.7
P10809_1003
95.2
P10809_1020
121.2
P10809_1039
148.4
P10809_1058
91.3
P10809_1080
87.5
P10809_1107
82.7
Intermediate monocyte nTPM: 174.6
Samples: 6
Max nTPM: 222.4
Min nTPM: 123.9
P10809_1004
139.3
P10809_1023
196.1
P10809_1042
222.4
P10809_1061
207.0
P10809_1081
123.9
P10809_1108
158.8
Non-classical monocyte nTPM: 261.7
Samples: 5
Max nTPM: 339.1
Min nTPM: 196.4
P10809_1005
196.4
P10809_1053
339.1
P10809_1072
277.0
P10809_1082
216.1
P10809_1109
279.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
619.7
Monaco sample
nTPM
Classical monocyte nTPM: 328.2
Samples: 4
Max nTPM: 407.3
Min nTPM: 246.4
RHH5313_R3680
246.4
RHH5221_R3593
407.3
RHH5250_R3622
385.7
RHH5279_R3651
273.3
Intermediate monocyte nTPM: 450.4
Samples: 4
Max nTPM: 580.2
Min nTPM: 368.3
RHH5314_R3681
387.1
RHH5222_R3594
368.3
RHH5251_R3623
580.2
RHH5280_R3652
466.1
Non-classical monocyte nTPM: 619.7
Samples: 4
Max nTPM: 803.3
Min nTPM: 462.4
RHH5315_R3682
645.8
RHH5223_R3595
462.4
RHH5252_R3624
803.3
RHH5281_R3653
567.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
319.5
Schmiedel sample id
TPM
Classical monocyte TPM: 163.5
Samples: 91
Max TPM: 308.0
Min TPM: 89.0
MONOCYTES_1
308.0
MONOCYTES_2
285.7
MONOCYTES_3
261.9
MONOCYTES_4
259.4
MONOCYTES_5
240.9
MONOCYTES_6
234.7
MONOCYTES_7
234.0
MONOCYTES_8
233.0
MONOCYTES_9
228.4
MONOCYTES_10
219.2
MONOCYTES_11
214.6
MONOCYTES_12
208.9
MONOCYTES_13
202.9
MONOCYTES_14
201.1
MONOCYTES_15
197.0
MONOCYTES_16
192.9
MONOCYTES_17
191.9
MONOCYTES_18
188.7
MONOCYTES_19
185.5
MONOCYTES_20
184.9
MONOCYTES_21
184.5
MONOCYTES_22
184.3
MONOCYTES_23
184.1
MONOCYTES_24
182.6
MONOCYTES_25
182.4
MONOCYTES_26
181.0
MONOCYTES_27
178.0
MONOCYTES_28
177.7
MONOCYTES_29
177.3
MONOCYTES_30
175.9
MONOCYTES_31
175.6
MONOCYTES_32
174.5
MONOCYTES_33
168.0
MONOCYTES_34
166.7
MONOCYTES_35
165.8
MONOCYTES_36
165.4
MONOCYTES_37
165.0
MONOCYTES_38
164.9
MONOCYTES_39
164.5
MONOCYTES_40
163.0
MONOCYTES_41
159.5
MONOCYTES_42
159.4
MONOCYTES_43
158.2
MONOCYTES_44
157.6
MONOCYTES_45
156.8
MONOCYTES_46
155.5
MONOCYTES_47
154.9
MONOCYTES_48
151.6
MONOCYTES_49
151.6
MONOCYTES_50
150.9
MONOCYTES_51
150.2
MONOCYTES_52
146.8
MONOCYTES_53
146.1
MONOCYTES_54
145.8
MONOCYTES_55
145.3
MONOCYTES_56
143.0
MONOCYTES_57
141.9
MONOCYTES_58
141.7
MONOCYTES_59
140.8
MONOCYTES_60
140.7
MONOCYTES_61
140.6
MONOCYTES_62
140.4
MONOCYTES_63
140.0
MONOCYTES_64
139.9
MONOCYTES_65
138.5
MONOCYTES_66
137.9
MONOCYTES_67
137.7
MONOCYTES_68
136.1
MONOCYTES_69
135.8
MONOCYTES_70
134.6
MONOCYTES_71
133.9
MONOCYTES_72
133.6
MONOCYTES_73
132.9
MONOCYTES_74
131.4
MONOCYTES_75
131.2
MONOCYTES_76
130.8
MONOCYTES_77
130.2
MONOCYTES_78
128.5
MONOCYTES_79
128.5
MONOCYTES_80
127.4
MONOCYTES_81
122.6
MONOCYTES_82
122.6
MONOCYTES_83
121.9
MONOCYTES_84
117.5
MONOCYTES_85
116.0
MONOCYTES_86
114.1
MONOCYTES_87
111.6
MONOCYTES_88
107.2
MONOCYTES_89
105.6
MONOCYTES_90
105.0
MONOCYTES_91
89.0
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Non-classical monocyte TPM: 319.5
Samples: 90
Max TPM: 471.5
Min TPM: 200.6
M2_1
471.5
M2_2
441.0
M2_3
437.2
M2_4
421.9
M2_5
410.9
M2_6
409.4
M2_7
408.9
M2_8
404.3
M2_9
397.2
M2_10
394.2
M2_11
391.2
M2_12
389.6
M2_13
389.4
M2_14
389.1
M2_15
387.3
M2_16
386.3
M2_17
377.1
M2_18
376.3
M2_19
373.4
M2_20
364.8
M2_21
362.2
M2_22
358.7
M2_23
354.4
M2_24
351.3
M2_25
350.2
M2_26
347.5
M2_27
347.4
M2_28
346.3
M2_29
342.3
M2_30
341.9
M2_31
341.8
M2_32
339.5
M2_33
339.1
M2_34
338.1
M2_35
333.6
M2_36
331.9
M2_37
331.3
M2_38
329.9
M2_39
326.2
M2_40
324.4
M2_41
324.0
M2_42
321.7
M2_43
315.6
M2_44
315.3
M2_45
314.1
M2_46
312.5
M2_47
312.1
M2_48
311.3
M2_49
310.9
M2_50
307.3
M2_51
305.8
M2_52
304.5
M2_53
303.2
M2_54
301.3
M2_55
299.1
M2_56
296.3
M2_57
293.2
M2_58
291.7
M2_59
291.3
M2_60
290.6
M2_61
290.5
M2_62
289.6
M2_63
288.6
M2_64
288.3
M2_65
283.6
M2_66
281.9
M2_67
279.1
M2_68
275.9
M2_69
274.1
M2_70
274.1
M2_71
273.2
M2_72
271.8
M2_73
271.5
M2_74
262.7
M2_75
260.6
M2_76
259.4
M2_77
258.3
M2_78
257.3
M2_79
255.0
M2_80
253.8
M2_81
249.8
M2_82
249.4
M2_83
247.2
M2_84
240.7
M2_85
238.1
M2_86
235.4
M2_87
230.1
M2_88
219.2
M2_89
216.9
M2_90
200.6
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