A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
99.2
nTPM
Monaco:
249.8
nTPM
Schmiedel:
172.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
99.2
HPA sample
nTPM
Memory B-cell nTPM: 91.2
Samples: 6
Max nTPM: 142.0
Min nTPM: 58.4
P10809_1017
58.4
P10809_1025
100.8
P10809_1044
142.0
P10809_1063
87.1
P10809_1092
81.9
P10809_1105
77.1
Naive B-cell nTPM: 99.2
Samples: 6
Max nTPM: 189.1
Min nTPM: 46.9
P10809_1011
46.9
P10809_1029
82.9
P10809_1048
189.1
P10809_1067
83.5
P10809_1091
106.3
P10809_1104
86.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
249.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 249.7
Samples: 4
Max nTPM: 297.9
Min nTPM: 221.8
RHH5310_R3677
221.8
RHH5218_R3590
238.1
RHH5247_R3619
241.2
RHH5276_R3648
297.9
Naive B-cell nTPM: 194.3
Samples: 4
Max nTPM: 249.0
Min nTPM: 166.3
RHH5308_R3675
166.3
RHH5216_R3588
188.9
RHH5245_R3617
172.8
RHH5274_R3646
249.0
Non-switched memory B-cell nTPM: 181.2
Samples: 4
Max nTPM: 203.5
Min nTPM: 159.2
RHH5309_R3676
159.2
RHH5217_R3589
179.3
RHH5246_R3618
182.7
RHH5275_R3647
203.5
Plasmablast nTPM: 81.1
Samples: 4
Max nTPM: 93.9
Min nTPM: 66.0
RHH5312_R3679
93.9
RHH5220_R3592
66.0
RHH5249_R3621
70.7
RHH5278_R3650
93.8
Switched memory B-cell nTPM: 205.1
Samples: 4
Max nTPM: 236.1
Min nTPM: 171.6
RHH5311_R3678
171.6
RHH5219_R3591
190.0
RHH5248_R3620
236.1
RHH5277_R3649
222.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
172.6
Schmiedel sample id
TPM
Naive B-cell TPM: 172.6
Samples: 91
Max TPM: 272.4
Min TPM: 90.7
B_CELL_NAIVE_1
272.4
B_CELL_NAIVE_2
253.3
B_CELL_NAIVE_3
246.5
B_CELL_NAIVE_4
246.0
B_CELL_NAIVE_5
241.9
B_CELL_NAIVE_6
223.9
B_CELL_NAIVE_7
223.9
B_CELL_NAIVE_8
223.6
B_CELL_NAIVE_9
219.7
B_CELL_NAIVE_10
219.4
B_CELL_NAIVE_11
218.8
B_CELL_NAIVE_12
215.9
B_CELL_NAIVE_13
210.8
B_CELL_NAIVE_14
207.2
B_CELL_NAIVE_15
204.6
B_CELL_NAIVE_16
202.1
B_CELL_NAIVE_17
197.4
B_CELL_NAIVE_18
196.7
B_CELL_NAIVE_19
196.4
B_CELL_NAIVE_20
195.9
B_CELL_NAIVE_21
192.4
B_CELL_NAIVE_22
191.7
B_CELL_NAIVE_23
189.9
B_CELL_NAIVE_24
188.4
B_CELL_NAIVE_25
187.6
B_CELL_NAIVE_26
185.1
B_CELL_NAIVE_27
185.1
B_CELL_NAIVE_28
184.1
B_CELL_NAIVE_29
183.7
B_CELL_NAIVE_30
183.6
B_CELL_NAIVE_31
180.3
B_CELL_NAIVE_32
180.0
B_CELL_NAIVE_33
178.6
B_CELL_NAIVE_34
177.6
B_CELL_NAIVE_35
176.6
B_CELL_NAIVE_36
176.5
B_CELL_NAIVE_37
176.5
B_CELL_NAIVE_38
175.6
B_CELL_NAIVE_39
175.5
B_CELL_NAIVE_40
174.0
B_CELL_NAIVE_41
173.2
B_CELL_NAIVE_42
172.0
B_CELL_NAIVE_43
170.9
B_CELL_NAIVE_44
170.7
B_CELL_NAIVE_45
169.0
B_CELL_NAIVE_46
168.8
B_CELL_NAIVE_47
168.8
B_CELL_NAIVE_48
167.5
B_CELL_NAIVE_49
166.6
B_CELL_NAIVE_50
166.6
B_CELL_NAIVE_51
165.3
B_CELL_NAIVE_52
164.7
B_CELL_NAIVE_53
164.1
B_CELL_NAIVE_54
163.7
B_CELL_NAIVE_55
161.7
B_CELL_NAIVE_56
160.8
B_CELL_NAIVE_57
160.2
B_CELL_NAIVE_58
159.7
B_CELL_NAIVE_59
159.5
B_CELL_NAIVE_60
159.4
B_CELL_NAIVE_61
159.0
B_CELL_NAIVE_62
157.8
B_CELL_NAIVE_63
157.0
B_CELL_NAIVE_64
156.7
B_CELL_NAIVE_65
156.5
B_CELL_NAIVE_66
155.9
B_CELL_NAIVE_67
153.1
B_CELL_NAIVE_68
152.0
B_CELL_NAIVE_69
151.6
B_CELL_NAIVE_70
151.6
B_CELL_NAIVE_71
148.0
B_CELL_NAIVE_72
147.2
B_CELL_NAIVE_73
144.8
B_CELL_NAIVE_74
144.7
B_CELL_NAIVE_75
144.5
B_CELL_NAIVE_76
144.3
B_CELL_NAIVE_77
144.0
B_CELL_NAIVE_78
142.9
B_CELL_NAIVE_79
141.6
B_CELL_NAIVE_80
141.3
B_CELL_NAIVE_81
140.5
B_CELL_NAIVE_82
139.8
B_CELL_NAIVE_83
134.1
B_CELL_NAIVE_84
131.5
B_CELL_NAIVE_85
127.8
B_CELL_NAIVE_86
124.6
B_CELL_NAIVE_87
121.4
B_CELL_NAIVE_88
120.4
B_CELL_NAIVE_89
102.7
B_CELL_NAIVE_90
102.4
B_CELL_NAIVE_91
90.7
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