A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
70.3
nTPM
Monaco:
190.2
nTPM
Schmiedel:
105.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
70.3
HPA sample
nTPM
Classical monocyte nTPM: 70.3
Samples: 6
Max nTPM: 87.9
Min nTPM: 49.9
P10809_1003
59.8
P10809_1020
81.6
P10809_1039
87.9
P10809_1058
49.9
P10809_1080
80.1
P10809_1107
62.5
Intermediate monocyte nTPM: 62.6
Samples: 6
Max nTPM: 81.2
Min nTPM: 52.6
P10809_1004
61.8
P10809_1023
52.6
P10809_1042
81.2
P10809_1061
62.3
P10809_1081
59.8
P10809_1108
57.7
Non-classical monocyte nTPM: 57.4
Samples: 5
Max nTPM: 86.7
Min nTPM: 43.7
P10809_1005
46.5
P10809_1053
86.7
P10809_1072
43.7
P10809_1082
53.9
P10809_1109
56.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
190.2
Monaco sample
nTPM
Classical monocyte nTPM: 190.2
Samples: 4
Max nTPM: 192.9
Min nTPM: 187.0
RHH5313_R3680
192.9
RHH5221_R3593
192.4
RHH5250_R3622
188.5
RHH5279_R3651
187.0
Intermediate monocyte nTPM: 151.1
Samples: 4
Max nTPM: 180.3
Min nTPM: 119.0
RHH5314_R3681
132.2
RHH5222_R3594
173.0
RHH5251_R3623
119.0
RHH5280_R3652
180.3
Non-classical monocyte nTPM: 152.9
Samples: 4
Max nTPM: 169.3
Min nTPM: 140.9
RHH5315_R3682
145.0
RHH5223_R3595
169.3
RHH5252_R3624
140.9
RHH5281_R3653
156.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
105.3
Schmiedel sample id
TPM
Classical monocyte TPM: 71.9
Samples: 91
Max TPM: 109.0
Min TPM: 40.4
MONOCYTES_1
109.0
MONOCYTES_2
101.1
MONOCYTES_3
101.0
MONOCYTES_4
100.8
MONOCYTES_5
99.0
MONOCYTES_6
97.6
MONOCYTES_7
96.7
MONOCYTES_8
95.5
MONOCYTES_9
94.6
MONOCYTES_10
94.0
MONOCYTES_11
92.7
MONOCYTES_12
92.1
MONOCYTES_13
88.7
MONOCYTES_14
88.0
MONOCYTES_15
87.4
MONOCYTES_16
87.2
MONOCYTES_17
86.6
MONOCYTES_18
86.5
MONOCYTES_19
84.6
MONOCYTES_20
84.2
MONOCYTES_21
83.0
MONOCYTES_22
83.0
MONOCYTES_23
82.0
MONOCYTES_24
81.7
MONOCYTES_25
81.6
MONOCYTES_26
81.5
MONOCYTES_27
81.1
MONOCYTES_28
80.7
MONOCYTES_29
80.5
MONOCYTES_30
79.7
MONOCYTES_31
79.3
MONOCYTES_32
78.7
MONOCYTES_33
78.4
MONOCYTES_34
77.6
MONOCYTES_35
77.1
MONOCYTES_36
76.7
MONOCYTES_37
76.0
MONOCYTES_38
76.0
MONOCYTES_39
75.2
MONOCYTES_40
75.2
MONOCYTES_41
74.8
MONOCYTES_42
73.7
MONOCYTES_43
73.1
MONOCYTES_44
73.0
MONOCYTES_45
72.8
MONOCYTES_46
71.7
MONOCYTES_47
71.4
MONOCYTES_48
71.4
MONOCYTES_49
71.1
MONOCYTES_50
70.5
MONOCYTES_51
70.2
MONOCYTES_52
68.5
MONOCYTES_53
68.3
MONOCYTES_54
68.3
MONOCYTES_55
68.2
MONOCYTES_56
67.6
MONOCYTES_57
67.4
MONOCYTES_58
67.0
MONOCYTES_59
66.7
MONOCYTES_60
66.0
MONOCYTES_61
65.2
MONOCYTES_62
63.2
MONOCYTES_63
62.9
MONOCYTES_64
62.4
MONOCYTES_65
62.3
MONOCYTES_66
60.8
MONOCYTES_67
59.4
MONOCYTES_68
58.1
MONOCYTES_69
58.0
MONOCYTES_70
57.9
MONOCYTES_71
57.0
MONOCYTES_72
55.6
MONOCYTES_73
55.5
MONOCYTES_74
55.4
MONOCYTES_75
55.3
MONOCYTES_76
53.7
MONOCYTES_77
53.6
MONOCYTES_78
53.4
MONOCYTES_79
53.0
MONOCYTES_80
52.7
MONOCYTES_81
52.6
MONOCYTES_82
52.4
MONOCYTES_83
52.3
MONOCYTES_84
52.0
MONOCYTES_85
51.8
MONOCYTES_86
51.8
MONOCYTES_87
50.5
MONOCYTES_88
47.0
MONOCYTES_89
45.7
MONOCYTES_90
41.0
MONOCYTES_91
40.4
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Non-classical monocyte TPM: 105.3
Samples: 90
Max TPM: 159.7
Min TPM: 66.7
M2_1
159.7
M2_2
159.3
M2_3
141.8
M2_4
141.4
M2_5
139.4
M2_6
138.6
M2_7
135.5
M2_8
135.1
M2_9
133.8
M2_10
133.7
M2_11
133.3
M2_12
131.9
M2_13
130.7
M2_14
130.6
M2_15
126.8
M2_16
124.8
M2_17
124.7
M2_18
123.7
M2_19
122.6
M2_20
122.5
M2_21
121.5
M2_22
121.3
M2_23
121.3
M2_24
119.8
M2_25
117.1
M2_26
116.2
M2_27
115.7
M2_28
115.2
M2_29
114.9
M2_30
114.6
M2_31
113.8
M2_32
113.1
M2_33
112.7
M2_34
112.1
M2_35
110.2
M2_36
108.8
M2_37
108.1
M2_38
108.0
M2_39
106.5
M2_40
106.3
M2_41
104.8
M2_42
104.3
M2_43
103.6
M2_44
103.4
M2_45
103.2
M2_46
102.7
M2_47
102.7
M2_48
101.4
M2_49
101.0
M2_50
100.5
M2_51
100.2
M2_52
99.7
M2_53
99.4
M2_54
98.8
M2_55
98.0
M2_56
97.7
M2_57
97.3
M2_58
97.3
M2_59
96.2
M2_60
96.0
M2_61
95.2
M2_62
94.8
M2_63
93.3
M2_64
91.4
M2_65
90.9
M2_66
90.3
M2_67
89.8
M2_68
89.7
M2_69
89.7
M2_70
88.2
M2_71
87.5
M2_72
86.9
M2_73
84.9
M2_74
84.6
M2_75
83.5
M2_76
83.4
M2_77
83.0
M2_78
82.0
M2_79
81.7
M2_80
80.7
M2_81
79.7
M2_82
79.3
M2_83
77.7
M2_84
77.2
M2_85
76.4
M2_86
75.0
M2_87
72.8
M2_88
72.6
M2_89
69.2
M2_90
66.7
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