On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
13.1
nTPM
HPA Brain:
28.9
nTPM
GTEx:
13.1
nTPM
FANTOM5:
43.1
Scaled Tags Per Million
Macaque:
7.5
nTPM
Mouse:
0.4
nTPM
Rat:
1.1
nTPM
Pig:
17.3
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
ND
Sample
Intensity
Spinal cord_01
ND
Spinal cord_02
ND
Spinal cord_03
ND
Spinal cord_04
ND
Spinal cord_05
ND
Spinal cord_06
ND
Spinal cord_07
ND
Spinal cord_08
ND
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
28.9
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 24.8
2818
Female, age 79, both hemispheres
30.0
2734
Male, age 80, both hemispheres
28.1
2819
Male, age 47, both hemispheres
22.8
2193
Male, age 75, both hemispheres
18.3
Cervical spinal cord, central gray nTPM: 28.9
2565
Male, age 75, midline
37.3
2194
Female, age 79, both hemispheres
34.5
2816
Male, age 47, midline
28.0
1981
Female, age 72, midline
23.2
2048
Male, age 55, midline
21.6
Cervical spinal cord, dorsal horn nTPM: 22.8
2721
Male, age 90, both hemispheres
29.1
1877
Male, age 55, unknown
26.5
2296
Male, age 66, both hemispheres
25.9
2173
Female, age 72, unknown
19.8
2069
Male, age 47, both hemispheres
18.8
2297
Male, age 75, both hemispheres
16.7
Cervical spinal cord, ventral horn nTPM: 25.6
2809
Male, age 90, both hemispheres
32.9
2068
Male, age 55, unknown
30.2
2098
Female, age 72, unknown
24.9
2820
Female, age 79, both hemispheres
24.3
2480
Male, age 75, both hemispheres
21.6
2295
Male, age 66, both hemispheres
19.5
Dorsal funiculus (white matter) nTPM: 25.2
2064
Female, age 79, both hemispheres
32.2
2817
Male, age 47, both hemispheres
31.5
2812
Male, age 66, both hemispheres
22.2
2128
Male, age 75, both hemispheres
22.0
2810
Male, age 90, both hemispheres
18.0
Lateral funiculus (white matter) nTPM: 23.5
2294
Male, age 66, both hemispheres
28.6
2094
Female, age 79, both hemispheres
23.4
2192
Male, age 75, both hemispheres
23.4
2099
Male, age 90, both hemispheres
18.5
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
13.1
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 13.1
Samples: 204
Max nTPM: 89.0
Min nTPM: 4.3
Std nTPM: 8.9
Median nTPM: 10.5
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
89.0
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
48.4
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
46.3
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
42.1
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
41.7
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
41.6
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
35.4
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
34.5
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
32.1
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
30.0
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
28.2
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
26.3
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
26.3
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
25.8
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
25.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
22.9
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
22.5
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
21.1
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
20.1
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
19.9
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
19.7
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
19.2
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
18.8
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
18.4
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
18.4
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
17.7
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
17.4
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
17.3
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
17.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
17.1
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
16.8
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
16.6
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
16.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
16.5
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
16.4
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
16.4
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
16.2
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
16.2
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
15.8
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
15.4
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
15.3
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
15.2
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
15.1
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
15.0
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
15.0
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
15.0
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
14.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
14.8
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
14.5
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
14.4
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
14.3
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
14.2
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
14.0
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
14.0
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
13.9
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
13.7
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
13.7
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
13.7
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
13.6
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
13.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
13.2
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
13.2
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
13.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
13.1
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
13.0
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
12.9
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
12.9
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
12.8
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
12.6
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
12.6
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
12.6
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
12.5
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
12.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
12.2
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
12.2
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
12.2
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
12.1
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
12.1
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
12.0
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
11.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
11.9
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
11.9
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
11.8
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
11.7
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
11.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
11.7
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
11.6
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
11.6
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
11.6
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
11.5
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
11.4
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
11.4
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
11.2
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
11.1
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
11.1
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
11.1
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
11.1
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
11.0
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
11.0
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
10.9
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
10.9
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
10.6
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
10.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
10.5
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
10.5
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
10.4
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
10.4
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
10.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
10.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
10.3
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
10.2
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
10.1
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
10.1
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
10.1
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
10.0
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
10.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
10.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
10.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
9.9
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
9.9
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
9.8
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
9.8
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
9.8
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
9.7
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
9.7
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
9.6
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
9.6
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
9.6
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
9.5
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
9.4
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
9.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
9.4
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
9.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
9.3
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
9.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
9.2
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
9.2
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
9.1
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
9.1
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
9.1
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
9.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
9.0
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
9.0
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
8.9
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
8.9
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
8.8
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
8.7
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
8.7
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
8.6
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
8.6
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
8.6
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
8.6
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
8.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
8.5
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
8.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
8.4
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
8.4
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
8.3
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
8.2
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
8.2
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
8.2
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
8.2
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
8.1
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
8.0
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
7.9
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
7.9
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
7.8
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
7.7
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
7.7
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
7.7
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
7.6
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
7.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
7.6
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
7.6
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
7.6
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
7.5
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
7.5
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
7.4
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
7.3
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
7.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
7.3
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
7.2
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
7.2
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
7.2
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
7.1
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
7.0
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
6.9
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
6.8
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
6.8
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
6.7
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
6.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
6.6
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
6.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
6.5
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
6.3
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
6.2
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
6.1
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
5.9
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
5.7
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
5.6
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
5.5
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
5.4
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
4.7
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
4.3
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
7.5
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 1.2
Samples: 2
Max nTPM: 2.0
Min nTPM: 0.3
Sample A
0.3
Sample B
2.0
Ventral spinal cord nTPM: 7.5
Samples: 1
Max nTPM: 7.5
Min nTPM: 7.5
Sample A
7.5
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
17.3
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 17.3
Samples: 4
Max nTPM: 33.2
Min nTPM: 7.5
Sample A
Female
7.5
Sample B
Female
17.4
Sample C
Male
33.2
Sample D
Male
11.2
Ventral spinal cord nTPM: 12.1
Samples: 4
Max nTPM: 18.1
Min nTPM: 7.4
Sample A
Female
7.4
Sample B
Female
11.0
Sample C
Male
18.1
Sample D
Male
12.0
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.4
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 0.4
Samples: 4
Max nTPM: 0.6
Min nTPM: 0.2
Sample A
0.3
Sample B
0.6
Sample C
0.4
Sample D
0.2
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1.1
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 1.1
Samples: 4
Max nTPM: 1.6
Min nTPM: 0.5
Sample A
0.5
Sample A
1.4
Sample A
1.0
Sample A
1.6
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The Human Protein Atlas project is funded
