A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.4
nTPM
Monaco:
5.2
nTPM
Schmiedel:
54.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.4
HPA sample
nTPM
Memory B-cell nTPM: 0.2
Samples: 6
Max nTPM: 0.4
Min nTPM: 0.0
P10809_1017
0.3
P10809_1025
0.0
P10809_1044
0.4
P10809_1063
0.0
P10809_1092
0.2
P10809_1105
0.0
Naive B-cell nTPM: 0.4
Samples: 6
Max nTPM: 0.8
Min nTPM: 0.0
P10809_1011
0.8
P10809_1029
0.5
P10809_1048
0.0
P10809_1067
0.6
P10809_1091
0.3
P10809_1104
0.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 3.2
Samples: 4
Max nTPM: 5.3
Min nTPM: 0.1
RHH5310_R3677
2.9
RHH5218_R3590
4.4
RHH5247_R3619
0.1
RHH5276_R3648
5.3
Naive B-cell nTPM: 5.0
Samples: 4
Max nTPM: 7.7
Min nTPM: 3.0
RHH5308_R3675
7.7
RHH5216_R3588
3.0
RHH5245_R3617
6.1
RHH5274_R3646
3.3
Non-switched memory B-cell nTPM: 2.8
Samples: 4
Max nTPM: 6.1
Min nTPM: 1.3
RHH5309_R3676
1.5
RHH5217_R3589
2.4
RHH5246_R3618
1.3
RHH5275_R3647
6.1
Plasmablast nTPM: 5.2
Samples: 4
Max nTPM: 11.3
Min nTPM: 0.8
RHH5312_R3679
0.8
RHH5220_R3592
11.3
RHH5249_R3621
5.0
RHH5278_R3650
3.6
Switched memory B-cell nTPM: 4.8
Samples: 4
Max nTPM: 11.8
Min nTPM: 1.9
RHH5311_R3678
1.9
RHH5219_R3591
2.5
RHH5248_R3620
3.0
RHH5277_R3649
11.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.9
Schmiedel sample id
TPM
Naive B-cell TPM: 54.9
Samples: 91
Max TPM: 75.6
Min TPM: 29.5
B_CELL_NAIVE_1
75.6
B_CELL_NAIVE_2
70.6
B_CELL_NAIVE_3
67.5
B_CELL_NAIVE_4
66.3
B_CELL_NAIVE_5
66.2
B_CELL_NAIVE_6
65.5
B_CELL_NAIVE_7
65.4
B_CELL_NAIVE_8
64.6
B_CELL_NAIVE_9
64.1
B_CELL_NAIVE_10
63.7
B_CELL_NAIVE_11
63.6
B_CELL_NAIVE_12
63.3
B_CELL_NAIVE_13
63.3
B_CELL_NAIVE_14
63.1
B_CELL_NAIVE_15
62.9
B_CELL_NAIVE_16
62.9
B_CELL_NAIVE_17
62.8
B_CELL_NAIVE_18
62.6
B_CELL_NAIVE_19
62.2
B_CELL_NAIVE_20
62.0
B_CELL_NAIVE_21
61.5
B_CELL_NAIVE_22
61.4
B_CELL_NAIVE_23
61.1
B_CELL_NAIVE_24
61.0
B_CELL_NAIVE_25
61.0
B_CELL_NAIVE_26
60.9
B_CELL_NAIVE_27
60.8
B_CELL_NAIVE_28
60.5
B_CELL_NAIVE_29
60.4
B_CELL_NAIVE_30
60.4
B_CELL_NAIVE_31
59.9
B_CELL_NAIVE_32
59.8
B_CELL_NAIVE_33
59.7
B_CELL_NAIVE_34
59.6
B_CELL_NAIVE_35
59.6
B_CELL_NAIVE_36
59.4
B_CELL_NAIVE_37
59.2
B_CELL_NAIVE_38
59.0
B_CELL_NAIVE_39
58.7
B_CELL_NAIVE_40
58.6
B_CELL_NAIVE_41
58.4
B_CELL_NAIVE_42
58.0
B_CELL_NAIVE_43
57.8
B_CELL_NAIVE_44
57.7
B_CELL_NAIVE_45
57.6
B_CELL_NAIVE_46
57.3
B_CELL_NAIVE_47
57.2
B_CELL_NAIVE_48
57.1
B_CELL_NAIVE_49
57.1
B_CELL_NAIVE_50
56.7
B_CELL_NAIVE_51
56.6
B_CELL_NAIVE_52
56.1
B_CELL_NAIVE_53
56.0
B_CELL_NAIVE_54
55.5
B_CELL_NAIVE_55
55.5
B_CELL_NAIVE_56
54.4
B_CELL_NAIVE_57
53.3
B_CELL_NAIVE_58
53.3
B_CELL_NAIVE_59
53.0
B_CELL_NAIVE_60
52.1
B_CELL_NAIVE_61
51.5
B_CELL_NAIVE_62
50.8
B_CELL_NAIVE_63
50.8
B_CELL_NAIVE_64
50.0
B_CELL_NAIVE_65
50.0
B_CELL_NAIVE_66
50.0
B_CELL_NAIVE_67
49.4
B_CELL_NAIVE_68
49.1
B_CELL_NAIVE_69
48.7
B_CELL_NAIVE_70
48.5
B_CELL_NAIVE_71
48.4
B_CELL_NAIVE_72
48.4
B_CELL_NAIVE_73
48.2
B_CELL_NAIVE_74
47.3
B_CELL_NAIVE_75
47.3
B_CELL_NAIVE_76
46.7
B_CELL_NAIVE_77
44.9
B_CELL_NAIVE_78
43.9
B_CELL_NAIVE_79
43.1
B_CELL_NAIVE_80
42.4
B_CELL_NAIVE_81
41.7
B_CELL_NAIVE_82
41.4
B_CELL_NAIVE_83
40.9
B_CELL_NAIVE_84
40.5
B_CELL_NAIVE_85
40.2
B_CELL_NAIVE_86
38.4
B_CELL_NAIVE_87
37.6
B_CELL_NAIVE_88
36.2
B_CELL_NAIVE_89
35.6
B_CELL_NAIVE_90
35.6
B_CELL_NAIVE_91
29.5
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