A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.4
nTPM
Monaco:
6.8
nTPM
Schmiedel:
52.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.4
HPA sample
nTPM
Classical monocyte nTPM: 0.4
Samples: 6
Max nTPM: 0.6
Min nTPM: 0.2
P10809_1003
0.5
P10809_1020
0.2
P10809_1039
0.3
P10809_1058
0.3
P10809_1080
0.6
P10809_1107
0.5
Intermediate monocyte nTPM: 0.2
Samples: 6
Max nTPM: 0.4
Min nTPM: 0.0
P10809_1004
0.4
P10809_1023
0.1
P10809_1042
0.3
P10809_1061
0.0
P10809_1081
0.3
P10809_1108
0.0
Non-classical monocyte nTPM: 4.4
Samples: 5
Max nTPM: 18.4
Min nTPM: 0.6
P10809_1005
1.3
P10809_1053
0.6
P10809_1072
18.4
P10809_1082
1.0
P10809_1109
0.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.8
Monaco sample
nTPM
Classical monocyte nTPM: 4.6
Samples: 4
Max nTPM: 10.3
Min nTPM: 0.9
RHH5313_R3680
5.0
RHH5221_R3593
10.3
RHH5250_R3622
0.9
RHH5279_R3651
2.2
Intermediate monocyte nTPM: 5.4
Samples: 4
Max nTPM: 8.4
Min nTPM: 3.3
RHH5314_R3681
6.2
RHH5222_R3594
3.8
RHH5251_R3623
8.4
RHH5280_R3652
3.3
Non-classical monocyte nTPM: 6.8
Samples: 4
Max nTPM: 9.3
Min nTPM: 3.6
RHH5315_R3682
9.3
RHH5223_R3595
6.5
RHH5252_R3624
7.7
RHH5281_R3653
3.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
52.2
Schmiedel sample id
TPM
Classical monocyte TPM: 41.1
Samples: 91
Max TPM: 50.8
Min TPM: 26.8
MONOCYTES_1
50.8
MONOCYTES_2
50.7
MONOCYTES_3
50.1
MONOCYTES_4
49.7
MONOCYTES_5
49.0
MONOCYTES_6
48.8
MONOCYTES_7
47.4
MONOCYTES_8
47.1
MONOCYTES_9
46.7
MONOCYTES_10
46.5
MONOCYTES_11
46.0
MONOCYTES_12
46.0
MONOCYTES_13
45.7
MONOCYTES_14
45.5
MONOCYTES_15
45.4
MONOCYTES_16
45.1
MONOCYTES_17
45.0
MONOCYTES_18
44.8
MONOCYTES_19
44.8
MONOCYTES_20
44.7
MONOCYTES_21
44.6
MONOCYTES_22
44.3
MONOCYTES_23
44.2
MONOCYTES_24
44.1
MONOCYTES_25
44.0
MONOCYTES_26
43.8
MONOCYTES_27
43.3
MONOCYTES_28
43.0
MONOCYTES_29
42.9
MONOCYTES_30
42.9
MONOCYTES_31
42.8
MONOCYTES_32
42.8
MONOCYTES_33
42.7
MONOCYTES_34
42.5
MONOCYTES_35
42.4
MONOCYTES_36
42.2
MONOCYTES_37
42.2
MONOCYTES_38
42.2
MONOCYTES_39
42.2
MONOCYTES_40
42.1
MONOCYTES_41
41.8
MONOCYTES_42
41.8
MONOCYTES_43
41.7
MONOCYTES_44
41.6
MONOCYTES_45
41.5
MONOCYTES_46
41.5
MONOCYTES_47
41.2
MONOCYTES_48
41.1
MONOCYTES_49
41.1
MONOCYTES_50
41.0
MONOCYTES_51
40.9
MONOCYTES_52
40.9
MONOCYTES_53
40.8
MONOCYTES_54
40.3
MONOCYTES_55
40.2
MONOCYTES_56
40.1
MONOCYTES_57
39.9
MONOCYTES_58
39.7
MONOCYTES_59
39.5
MONOCYTES_60
39.5
MONOCYTES_61
39.3
MONOCYTES_62
39.2
MONOCYTES_63
39.1
MONOCYTES_64
39.1
MONOCYTES_65
39.0
MONOCYTES_66
39.0
MONOCYTES_67
38.7
MONOCYTES_68
38.5
MONOCYTES_69
38.4
MONOCYTES_70
37.9
MONOCYTES_71
37.9
MONOCYTES_72
37.8
MONOCYTES_73
37.7
MONOCYTES_74
37.5
MONOCYTES_75
37.4
MONOCYTES_76
37.3
MONOCYTES_77
37.2
MONOCYTES_78
37.1
MONOCYTES_79
36.6
MONOCYTES_80
36.3
MONOCYTES_81
36.0
MONOCYTES_82
35.2
MONOCYTES_83
34.7
MONOCYTES_84
34.3
MONOCYTES_85
34.3
MONOCYTES_86
33.9
MONOCYTES_87
33.8
MONOCYTES_88
31.8
MONOCYTES_89
31.2
MONOCYTES_90
30.4
MONOCYTES_91
26.8
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Non-classical monocyte TPM: 52.2
Samples: 90
Max TPM: 64.8
Min TPM: 41.2
M2_1
64.8
M2_2
62.1
M2_3
59.9
M2_4
59.9
M2_5
59.9
M2_6
59.8
M2_7
59.6
M2_8
59.5
M2_9
59.2
M2_10
58.7
M2_11
58.5
M2_12
58.4
M2_13
58.0
M2_14
57.8
M2_15
57.5
M2_16
57.4
M2_17
57.3
M2_18
57.3
M2_19
56.9
M2_20
56.8
M2_21
56.7
M2_22
56.6
M2_23
56.6
M2_24
56.6
M2_25
56.3
M2_26
55.6
M2_27
55.6
M2_28
55.6
M2_29
55.5
M2_30
55.5
M2_31
55.4
M2_32
55.4
M2_33
55.2
M2_34
55.1
M2_35
54.9
M2_36
54.8
M2_37
54.8
M2_38
54.4
M2_39
54.4
M2_40
54.1
M2_41
54.1
M2_42
53.9
M2_43
53.7
M2_44
53.7
M2_45
53.6
M2_46
53.3
M2_47
52.6
M2_48
52.5
M2_49
52.5
M2_50
52.5
M2_51
51.9
M2_52
51.6
M2_53
51.6
M2_54
51.3
M2_55
50.8
M2_56
50.8
M2_57
50.7
M2_58
50.6
M2_59
50.4
M2_60
50.2
M2_61
50.2
M2_62
49.9
M2_63
49.8
M2_64
49.2
M2_65
49.1
M2_66
48.9
M2_67
48.7
M2_68
48.6
M2_69
48.4
M2_70
48.2
M2_71
46.8
M2_72
46.0
M2_73
45.9
M2_74
45.7
M2_75
45.6
M2_76
44.8
M2_77
44.7
M2_78
44.6
M2_79
44.4
M2_80
43.9
M2_81
43.8
M2_82
43.7
M2_83
43.7
M2_84
43.4
M2_85
43.3
M2_86
43.0
M2_87
42.4
M2_88
41.7
M2_89
41.5
M2_90
41.2
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