A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.8
nTPM
Monaco:
52.1
nTPM
Schmiedel:
71.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.8
HPA sample
nTPM
Memory B-cell nTPM: 3.8
Samples: 6
Max nTPM: 11.9
Min nTPM: 0.9
P10809_1017
2.6
P10809_1025
0.9
P10809_1044
11.9
P10809_1063
2.5
P10809_1092
2.6
P10809_1105
2.1
Naive B-cell nTPM: 4.8
Samples: 6
Max nTPM: 18.4
Min nTPM: 0.5
P10809_1011
2.5
P10809_1029
2.2
P10809_1048
18.4
P10809_1067
0.5
P10809_1091
3.3
P10809_1104
1.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
52.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 46.2
Samples: 4
Max nTPM: 61.3
Min nTPM: 40.2
RHH5310_R3677
40.6
RHH5218_R3590
42.7
RHH5247_R3619
40.2
RHH5276_R3648
61.3
Naive B-cell nTPM: 37.6
Samples: 4
Max nTPM: 44.9
Min nTPM: 27.5
RHH5308_R3675
44.9
RHH5216_R3588
27.5
RHH5245_R3617
40.5
RHH5274_R3646
37.3
Non-switched memory B-cell nTPM: 38.1
Samples: 4
Max nTPM: 52.3
Min nTPM: 19.9
RHH5309_R3676
41.6
RHH5217_R3589
38.6
RHH5246_R3618
19.9
RHH5275_R3647
52.3
Plasmablast nTPM: 52.1
Samples: 4
Max nTPM: 58.6
Min nTPM: 46.3
RHH5312_R3679
46.3
RHH5220_R3592
58.6
RHH5249_R3621
52.6
RHH5278_R3650
50.9
Switched memory B-cell nTPM: 47.7
Samples: 4
Max nTPM: 58.9
Min nTPM: 32.2
RHH5311_R3678
54.7
RHH5219_R3591
44.9
RHH5248_R3620
32.2
RHH5277_R3649
58.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.0
Schmiedel sample id
TPM
Naive B-cell TPM: 71.0
Samples: 91
Max TPM: 97.8
Min TPM: 34.4
B_CELL_NAIVE_1
97.8
B_CELL_NAIVE_2
95.4
B_CELL_NAIVE_3
94.3
B_CELL_NAIVE_4
92.3
B_CELL_NAIVE_5
91.5
B_CELL_NAIVE_6
90.9
B_CELL_NAIVE_7
87.6
B_CELL_NAIVE_8
86.6
B_CELL_NAIVE_9
86.5
B_CELL_NAIVE_10
85.7
B_CELL_NAIVE_11
85.6
B_CELL_NAIVE_12
85.1
B_CELL_NAIVE_13
84.9
B_CELL_NAIVE_14
84.5
B_CELL_NAIVE_15
84.4
B_CELL_NAIVE_16
84.1
B_CELL_NAIVE_17
83.6
B_CELL_NAIVE_18
83.3
B_CELL_NAIVE_19
82.5
B_CELL_NAIVE_20
82.5
B_CELL_NAIVE_21
82.3
B_CELL_NAIVE_22
82.1
B_CELL_NAIVE_23
81.1
B_CELL_NAIVE_24
80.8
B_CELL_NAIVE_25
80.8
B_CELL_NAIVE_26
80.7
B_CELL_NAIVE_27
80.7
B_CELL_NAIVE_28
80.3
B_CELL_NAIVE_29
80.1
B_CELL_NAIVE_30
80.0
B_CELL_NAIVE_31
79.7
B_CELL_NAIVE_32
79.6
B_CELL_NAIVE_33
79.2
B_CELL_NAIVE_34
78.8
B_CELL_NAIVE_35
78.5
B_CELL_NAIVE_36
78.3
B_CELL_NAIVE_37
77.6
B_CELL_NAIVE_38
77.5
B_CELL_NAIVE_39
76.4
B_CELL_NAIVE_40
76.3
B_CELL_NAIVE_41
76.0
B_CELL_NAIVE_42
75.4
B_CELL_NAIVE_43
75.1
B_CELL_NAIVE_44
75.0
B_CELL_NAIVE_45
74.8
B_CELL_NAIVE_46
73.8
B_CELL_NAIVE_47
73.1
B_CELL_NAIVE_48
72.9
B_CELL_NAIVE_49
72.7
B_CELL_NAIVE_50
72.4
B_CELL_NAIVE_51
72.3
B_CELL_NAIVE_52
69.7
B_CELL_NAIVE_53
69.7
B_CELL_NAIVE_54
69.6
B_CELL_NAIVE_55
69.3
B_CELL_NAIVE_56
68.6
B_CELL_NAIVE_57
68.6
B_CELL_NAIVE_58
67.8
B_CELL_NAIVE_59
67.5
B_CELL_NAIVE_60
67.1
B_CELL_NAIVE_61
67.0
B_CELL_NAIVE_62
66.0
B_CELL_NAIVE_63
66.0
B_CELL_NAIVE_64
65.1
B_CELL_NAIVE_65
65.0
B_CELL_NAIVE_66
64.8
B_CELL_NAIVE_67
63.7
B_CELL_NAIVE_68
63.6
B_CELL_NAIVE_69
62.7
B_CELL_NAIVE_70
61.9
B_CELL_NAIVE_71
61.5
B_CELL_NAIVE_72
60.8
B_CELL_NAIVE_73
60.5
B_CELL_NAIVE_74
58.7
B_CELL_NAIVE_75
58.4
B_CELL_NAIVE_76
57.6
B_CELL_NAIVE_77
57.5
B_CELL_NAIVE_78
54.9
B_CELL_NAIVE_79
51.8
B_CELL_NAIVE_80
50.8
B_CELL_NAIVE_81
50.5
B_CELL_NAIVE_82
48.3
B_CELL_NAIVE_83
48.0
B_CELL_NAIVE_84
47.1
B_CELL_NAIVE_85
45.2
B_CELL_NAIVE_86
44.2
B_CELL_NAIVE_87
43.2
B_CELL_NAIVE_88
36.7
B_CELL_NAIVE_89
36.5
B_CELL_NAIVE_90
35.7
B_CELL_NAIVE_91
34.4
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The Human Protein Atlas project is funded
