A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.9
nTPM
Monaco:
50.9
nTPM
Schmiedel:
84.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.9
HPA sample
nTPM
Classical monocyte nTPM: 2.9
Samples: 6
Max nTPM: 4.1
Min nTPM: 2.2
P10809_1003
2.2
P10809_1020
3.6
P10809_1039
4.1
P10809_1058
2.2
P10809_1080
2.8
P10809_1107
2.6
Intermediate monocyte nTPM: 3.9
Samples: 6
Max nTPM: 8.3
Min nTPM: 0.9
P10809_1004
5.0
P10809_1023
1.6
P10809_1042
5.8
P10809_1061
8.3
P10809_1081
1.7
P10809_1108
0.9
Non-classical monocyte nTPM: 2.5
Samples: 5
Max nTPM: 4.6
Min nTPM: 0.0
P10809_1005
4.6
P10809_1053
2.5
P10809_1072
0.0
P10809_1082
2.4
P10809_1109
3.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
50.9
Monaco sample
nTPM
Classical monocyte nTPM: 35.7
Samples: 4
Max nTPM: 44.3
Min nTPM: 27.7
RHH5313_R3680
44.3
RHH5221_R3593
27.7
RHH5250_R3622
30.5
RHH5279_R3651
40.4
Intermediate monocyte nTPM: 46.0
Samples: 4
Max nTPM: 63.1
Min nTPM: 33.9
RHH5314_R3681
38.3
RHH5222_R3594
48.7
RHH5251_R3623
63.1
RHH5280_R3652
33.9
Non-classical monocyte nTPM: 50.9
Samples: 4
Max nTPM: 57.7
Min nTPM: 41.8
RHH5315_R3682
52.2
RHH5223_R3595
41.8
RHH5252_R3624
52.0
RHH5281_R3653
57.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
84.2
Schmiedel sample id
TPM
Classical monocyte TPM: 59.8
Samples: 91
Max TPM: 77.3
Min TPM: 38.0
MONOCYTES_1
77.3
MONOCYTES_2
77.2
MONOCYTES_3
76.3
MONOCYTES_4
74.4
MONOCYTES_5
73.9
MONOCYTES_6
72.9
MONOCYTES_7
72.4
MONOCYTES_8
71.6
MONOCYTES_9
71.4
MONOCYTES_10
71.3
MONOCYTES_11
70.5
MONOCYTES_12
70.4
MONOCYTES_13
70.2
MONOCYTES_14
68.4
MONOCYTES_15
67.9
MONOCYTES_16
66.8
MONOCYTES_17
66.7
MONOCYTES_18
66.6
MONOCYTES_19
66.5
MONOCYTES_20
66.5
MONOCYTES_21
66.4
MONOCYTES_22
65.9
MONOCYTES_23
65.3
MONOCYTES_24
65.0
MONOCYTES_25
64.8
MONOCYTES_26
64.8
MONOCYTES_27
64.2
MONOCYTES_28
63.1
MONOCYTES_29
63.0
MONOCYTES_30
62.8
MONOCYTES_31
62.1
MONOCYTES_32
62.0
MONOCYTES_33
61.9
MONOCYTES_34
61.9
MONOCYTES_35
61.6
MONOCYTES_36
61.4
MONOCYTES_37
61.4
MONOCYTES_38
60.7
MONOCYTES_39
60.7
MONOCYTES_40
60.6
MONOCYTES_41
60.5
MONOCYTES_42
60.1
MONOCYTES_43
59.9
MONOCYTES_44
59.7
MONOCYTES_45
59.6
MONOCYTES_46
59.6
MONOCYTES_47
59.5
MONOCYTES_48
59.4
MONOCYTES_49
59.2
MONOCYTES_50
59.1
MONOCYTES_51
59.1
MONOCYTES_52
59.0
MONOCYTES_53
58.9
MONOCYTES_54
58.9
MONOCYTES_55
58.3
MONOCYTES_56
57.9
MONOCYTES_57
57.6
MONOCYTES_58
57.6
MONOCYTES_59
57.3
MONOCYTES_60
57.2
MONOCYTES_61
56.8
MONOCYTES_62
56.8
MONOCYTES_63
56.6
MONOCYTES_64
56.2
MONOCYTES_65
56.2
MONOCYTES_66
56.0
MONOCYTES_67
55.8
MONOCYTES_68
55.3
MONOCYTES_69
55.3
MONOCYTES_70
54.7
MONOCYTES_71
54.6
MONOCYTES_72
54.2
MONOCYTES_73
54.2
MONOCYTES_74
53.8
MONOCYTES_75
53.0
MONOCYTES_76
53.0
MONOCYTES_77
52.9
MONOCYTES_78
51.5
MONOCYTES_79
50.9
MONOCYTES_80
49.3
MONOCYTES_81
49.3
MONOCYTES_82
48.7
MONOCYTES_83
48.4
MONOCYTES_84
46.7
MONOCYTES_85
46.6
MONOCYTES_86
45.7
MONOCYTES_87
45.6
MONOCYTES_88
43.7
MONOCYTES_89
43.5
MONOCYTES_90
41.1
MONOCYTES_91
38.0
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Non-classical monocyte TPM: 84.2
Samples: 90
Max TPM: 117.1
Min TPM: 49.6
M2_1
117.1
M2_2
114.1
M2_3
107.9
M2_4
105.8
M2_5
104.7
M2_6
104.1
M2_7
102.5
M2_8
102.0
M2_9
101.1
M2_10
101.1
M2_11
99.4
M2_12
98.3
M2_13
97.9
M2_14
97.8
M2_15
97.4
M2_16
97.3
M2_17
97.3
M2_18
96.8
M2_19
96.6
M2_20
95.7
M2_21
93.4
M2_22
93.3
M2_23
93.3
M2_24
92.8
M2_25
92.8
M2_26
92.7
M2_27
92.5
M2_28
92.0
M2_29
91.9
M2_30
91.7
M2_31
91.7
M2_32
89.2
M2_33
88.4
M2_34
88.3
M2_35
88.2
M2_36
88.1
M2_37
87.9
M2_38
87.6
M2_39
87.5
M2_40
86.9
M2_41
86.7
M2_42
86.5
M2_43
86.3
M2_44
86.1
M2_45
86.1
M2_46
85.8
M2_47
85.6
M2_48
84.6
M2_49
83.8
M2_50
83.8
M2_51
83.6
M2_52
83.1
M2_53
83.0
M2_54
82.1
M2_55
82.0
M2_56
81.9
M2_57
81.8
M2_58
79.6
M2_59
79.0
M2_60
78.9
M2_61
78.8
M2_62
78.5
M2_63
78.4
M2_64
78.1
M2_65
77.6
M2_66
76.9
M2_67
76.7
M2_68
76.5
M2_69
76.4
M2_70
75.7
M2_71
75.7
M2_72
74.9
M2_73
73.8
M2_74
72.5
M2_75
70.5
M2_76
70.2
M2_77
70.1
M2_78
68.1
M2_79
67.7
M2_80
64.0
M2_81
63.5
M2_82
63.5
M2_83
63.1
M2_84
62.3
M2_85
59.5
M2_86
57.8
M2_87
57.0
M2_88
51.9
M2_89
50.5
M2_90
49.6
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