MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.5 nTPM
HPA Brain:146.9 nTPM
GTEx:26.5 nTPM
FANTOM5:82.0 Scaled Tags Per Million
Pig:32.5 nTPM
Mouse:33.6 nTPM
Allen mouse:0.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 146.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 136.5
2586 Male, age 75, left hemisphere 187.5
2019 Male, age 18, unknown 144.9
2828 Female, age 72, unknown 144.1
2411 Female, age 72, unknown 141.3
1870 Female, age 42, unknown 135.6
2666 Male, age 74, left hemisphere 131.1
1833 Male, age 53, unknown 129.8
1830 Male, age 51, unknown 125.4
1827 Male, age 72, unknown 123.3
2219 Male, age 76, both hemispheres 102.0
Dorsal raphe nucleus
nTPM: 118.1
2750 Male, age 76, both hemispheres 143.4
1828 Male, age 53, unknown 116.9
2047 Male, age 72, unknown 114.6
2016 Female, age 72, unknown 111.2
2298 Female, age 72, unknown 104.6
Inferior colliculus
nTPM: 106.9
1890 Male, age 53, unknown 115.3
1848 Female, age 42, unknown 110.8
2097 Female, age 72, unknown 102.6
2849 Male, age 72, unknown 98.9
Median raphe nucleus
nTPM: 108.8
2220 Male, age 76, midline 108.8
Periaquaductal grey, anterior
nTPM: 134.5
2502 Female, age 75, unknown 146.5
1795 Male, age 51, unknown 134.7
1947 Male, age 18, unknown 122.4
Periaquaductal grey, dorsal
nTPM: 97.9
2464 Female, age 72, unknown 120.7
1831 Male, age 72, unknown 105.0
1840 Male, age 53, unknown 92.5
2850 Male, age 76, both hemispheres 73.4
Periaquaductal grey, lateral
nTPM: 103.2
2053 Male, age 18, unknown 121.7
2272 Male, age 74, both hemispheres 98.4
2140 Male, age 76, both hemispheres 89.5
Pretectal area
nTPM: 124.9
1944 Female, age 72, unknown 146.9
1816 Male, age 51, unknown 145.5
2007 Male, age 72, unknown 139.4
1817 Female, age 42, unknown 134.9
1815 Male, age 53, unknown 131.8
2316 Male, age 76, right hemisphere 126.0
2667 Female, age 75, unknown 123.7
2407 Male, age 75, both hemispheres 113.4
2825 Male, age 18, unknown 110.1
2224 Female, age 72, unknown 105.3
2273 Male, age 74, both hemispheres 97.1
Red nucleus
nTPM: 146.9
1904 Male, age 53, unknown 163.4
2588 Male, age 74, left hemisphere 160.3
2823 Male, age 76, right hemisphere 154.2
2227 Male, age 72, unknown 151.3
2785 Male, age 18, unknown 149.9
2769 Male, age 72, unknown 149.5
2503 Female, age 72, unknown 149.4
2584 Male, age 75, left hemisphere 149.3
1865 Male, age 51, unknown 140.1
1954 Female, age 42, unknown 137.3
2725 Female, age 75, unknown 130.1
1821 Female, age 72, unknown 128.6
Substantia nigra
nTPM: 113.0
2583 Male, age 75, right hemisphere 145.9
1889 Female, age 72, unknown 124.8
1851 Male, age 51, unknown 118.2
2590 Female, age 75, unknown 117.2
2665 Male, age 74, both hemispheres 117.0
1916 Female, age 42, unknown 110.9
2409 Female, age 72, unknown 108.7
1941 Male, age 53, unknown 101.5
2699 Male, age 18, unknown 95.8
2241 Male, age 72, unknown 90.3
Superior colliculus
nTPM: 131.7
1995 Male, age 72, unknown 151.6
2664 Male, age 75, both hemispheres 150.8
1913 Female, age 42, unknown 150.6
2261 Male, age 18, unknown 144.1
2087 Female, age 72, unknown 141.2
2668 Female, age 75, unknown 128.8
1796 Male, age 53, unknown 128.7
2587 Male, age 74, left hemisphere 113.9
1839 Male, age 51, unknown 109.3
1895 Male, age 76, right hemisphere 98.0
Ventral tegmental area
nTPM: 123.0
2223 Female, age 72, unknown 141.1
1942 Male, age 51, unknown 132.3
2410 Female, age 72, unknown 130.5
2021 Male, age 53, unknown 116.2
1915 Female, age 42, unknown 108.9
2218 Male, age 76, both hemispheres 108.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 26.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.5
Samples: 183

Max nTPM: 59.8
Min nTPM: 12.3
Std nTPM: 7.1
Median nTPM: 25.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 59.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 56.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 44.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 43.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 43.5
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 41.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 40.7
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 39.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 38.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 38.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 38.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 82.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 82.0
FF:10158-103A5 76 years, female 82.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 32.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.4
Samples: 4

Max nTPM: 34.6
Min nTPM: 25.9
Sample A Female 32.5
Sample B Female 25.9
Sample C Male 32.7
Sample D Male 34.6
Midbrain
nTPM: 32.5
Samples: 4

Max nTPM: 36.9
Min nTPM: 24.7
Sample A Female 36.9
Sample B Female 24.7
Sample C Male 36.1
Sample D Male 32.3
Periaqueductal gray
nTPM: 22.9
Samples: 3

Max nTPM: 24.9
Min nTPM: 21.3
Sample B Female 22.5
Sample C Male 24.9
Sample D Male 21.3
Superior colliculi
nTPM: 28.4
Samples: 4

Max nTPM: 34.0
Min nTPM: 22.7
Sample A Female 29.5
Sample B Female 22.7
Sample C Male 27.2
Sample D Male 34.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 33.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.6
Samples: 4

Max nTPM: 36.1
Min nTPM: 31.2
Sample A Male 31.2
Sample B Male 32.4
Sample C Female 36.1
Sample D Female 34.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
71234609 Antisense, RP_050505_02_D03, Mouse strain C57BL/6J (56 days, male) 0.6

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