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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

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  • EVOLUTION

  • PABPC1
EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN72 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX
FRONTAL CORTEX FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS
MIDDLE TEMPORAL GYRUS MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX
SEPTAL AREA SEPTUM SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:221.2 nTPM
GTEx:85.2 nTPM
FANTOM5:530.9 Scaled Tags Per Million
Macaque:44.7 nTPM
Pig:161.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

221.2
Sample id Sample description nTPM
Substantia nigra
nTPM: 221.2
2699 Male, age 18, unknown 387.5
2665 Male, age 74, both hemispheres 287.1
2583 Male, age 75, right hemisphere 263.6
2590 Female, age 75, unknown 243.3
1851 Male, age 51, unknown 211.3
1916 Female, age 42, unknown 194.1
1941 Male, age 53, unknown 181.4
1889 Female, age 72, unknown 168.4
2241 Male, age 72, unknown 150.2
2409 Female, age 72, unknown 125.5

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 85.2
Samples: 183

Max nTPM: 209.3
Min nTPM: 40.3
Std nTPM: 27.8
Median nTPM: 83.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 209.3
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 184.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 160.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 151.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 149.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 147.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 145.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 143.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 139.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 138.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 138.2
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 134.9
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 132.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 127.7
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 124.8
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 121.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 119.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 119.0
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 118.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 117.5
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 115.6
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 115.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 113.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 113.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 112.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 112.2
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 110.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 109.8
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 109.6
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 108.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 108.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 107.4
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 107.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 106.9
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 106.5
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 105.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 105.1
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 103.2
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 102.9
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 102.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 102.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 101.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 101.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 101.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 101.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 100.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 100.6
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 100.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 100.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 99.9
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 99.5
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 99.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 98.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 98.0
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 97.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 95.1
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 94.8
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 94.5
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 94.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 94.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 94.1
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 94.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 92.9
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 92.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 92.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 92.4
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 91.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 91.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 91.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 90.6
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 90.5
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 90.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 90.3
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 90.3
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 90.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 88.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 88.2
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 87.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 87.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 87.4
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 86.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 86.7
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 85.6
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 85.0
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 84.8
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 84.6
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 84.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 84.4
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 84.0
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 83.4
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 83.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 83.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 82.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 82.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 81.7
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 81.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 81.2
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 80.8
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 80.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 79.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 78.9
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 78.3
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 78.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 78.1
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 78.1
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 77.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 76.8
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 75.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 75.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 74.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 73.5
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 73.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 72.2
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 71.7
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 70.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 70.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 70.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 70.0
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 69.7
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 69.6
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 69.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 69.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 69.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 68.7
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 68.5
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 68.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 68.0
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 67.9
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 67.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 67.8
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 67.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 67.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 67.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 67.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 67.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 66.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 65.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 64.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 62.8
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 62.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 62.6
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 62.1
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 62.0
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 61.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 61.2
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 61.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 60.9
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 60.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 60.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 60.4
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 60.3
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 59.9
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 58.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 57.9
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 57.8
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 57.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 57.4
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 57.3
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 56.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 56.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 55.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 54.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 54.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 54.3
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 54.0
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 53.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 53.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 52.9
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 52.0
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 51.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 50.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 49.8
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 49.3
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 48.6
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 47.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 45.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 45.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 44.8
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 44.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 42.9
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 41.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 41.2
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 40.3
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

530.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 530.9
FF:10158-103A5 76 years, female 530.9

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

44.7
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 44.7
Samples: 1

Max nTPM: 44.7
Min nTPM: 44.7
Sample A 44.7

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

161.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 161.1
Samples: 3

Max nTPM: 174.3
Min nTPM: 143.7
Sample A Female 165.2
Sample B Female 174.3
Sample C Male 143.7

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