HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:29.1 nTPM
HPA Brain:28.6 nTPM
GTEx:29.1 nTPM
FANTOM5:40.2 Scaled Tags Per Million
Pig:57.4 nTPM
Mouse:39.2 nTPM
Allen mouse:2.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA018195
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 28.6
Sample id Sample description nTPM
Hippocampus
nTPM: 23.8
2529 Female, age 94, left hemisphere 27.7
2621 Female, age 67, right hemisphere 25.1
1898 Male, age 80, left hemisphere 24.7
1911 Female, age 85, right hemisphere 22.8
1855 Male, age 76, left hemisphere 22.6
2148 Female, age 91, left hemisphere 19.9
Dentate gyrus
nTPM: 24.8
2010 Male, age 76, both hemispheres 27.7
1927 Female, age 91, both hemispheres 26.4
2246 Female, age 85, both hemispheres 25.2
2530 Female, age 94, left hemisphere 24.3
2528 Male, age 74, both hemispheres 24.0
2531 Female, age 67, both hemispheres 21.2
Entorhinal gyrus
nTPM: 23.7
2764 Male, age 80, right hemisphere 31.3
1787 Male, age 76, left hemisphere 25.6
1938 Female, age 85, left hemisphere 24.8
2117 Female, age 91, right hemisphere 24.1
2613 Female, age 94, left hemisphere 22.4
2686 Male, age 75, right hemisphere 13.8
Hippocampus, CA1
nTPM: 28.4
2749 Male, age 80, left hemisphere 36.6
2045 Male, age 76, both hemispheres 28.1
2082 Female, age 91, right hemisphere 26.9
2527 Male, age 74, both hemispheres 26.5
1873 Female, age 85, both hemispheres 24.2
Hippocampus, CA2
nTPM: 25.3
2249 Male, age 74, both hemispheres 35.8
1892 Male, age 76, both hemispheres 30.6
1963 Male, age 80, left hemisphere 25.2
2437 Female, age 94, left hemisphere 21.9
2113 Female, age 91, right hemisphere 20.6
1940 Female, age 85, left hemisphere 17.9
Hippocampus, CA3
nTPM: 26.3
1867 Male, age 76, both hemispheres 31.9
2436 Male, age 74, both hemispheres 31.6
2620 Female, age 94, left hemisphere 29.9
2137 Male, age 80, left hemisphere 24.9
1891 Female, age 85, both hemispheres 22.9
2861 Female, age 67, both hemispheres 16.7
Parahippocampal cortex
nTPM: 23.7
1850 Male, age 80, both hemispheres 29.7
2532 Female, age 72, left hemisphere 26.0
1933 Female, age 85, both hemispheres 25.5
1990 Female, age 91, right hemisphere 25.1
2018 Male, age 76, both hemispheres 24.2
2250 Female, age 67, right hemisphere 23.9
2245 Female, age 91, both hemispheres 22.6
2622 Female, age 67, right hemisphere 21.6
2693 Female, age 94, both hemispheres 19.9
2692 Male, age 74, both hemispheres 18.3
Perirhinal gyrus
nTPM: 28.6
1794 Male, age 80, right hemisphere 31.4
1847 Female, age 91, left hemisphere 30.9
1841 Female, age 85, right hemisphere 30.4
2848 Male, age 76, right hemisphere 26.6
2521 Female, age 94, right hemisphere 23.7
Subiculum
nTPM: 23.9
1977 Female, age 85, both hemispheres 29.6
2438 Female, age 94, left hemisphere 27.0
1901 Male, age 80, both hemispheres 24.7
2042 Male, age 76, both hemispheres 23.2
2619 Male, age 74, both hemispheres 19.6
2729 Female, age 91, right hemisphere 19.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 29.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 29.1
Samples: 255

Max nTPM: 49.2
Min nTPM: 11.7
Std nTPM: 6.7
Median nTPM: 28.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 49.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 48.8
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 44.7
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 44.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 44.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 43.6
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 43.4
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 43.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 41.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 41.2
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 41.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 40.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 40.2
FF:10169-103B7 60 years, female 40.5
FF:10153-102I9 76 years, female 40.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 57.4
Pig sample Sample description nTPM
Subiculum
nTPM: 47.5
Samples: 4

Max nTPM: 60.0
Min nTPM: 39.0
Sample A Female 60.0
Sample B Female 45.0
Sample C Male 39.0
Sample D Male 46.0
Dorsal hippocampus
nTPM: 57.4
Samples: 4

Max nTPM: 81.4
Min nTPM: 43.9
Sample A Female 81.4
Sample B Female 58.7
Sample C Male 43.9
Sample D Male 45.6
Entorhinal cortex
nTPM: 50.2
Samples: 4

Max nTPM: 59.7
Min nTPM: 38.2
Sample A Female 57.8
Sample B Female 59.7
Sample C Male 45.1
Sample D Male 38.2
Ventral hippocampus
nTPM: 46.7
Samples: 4

Max nTPM: 56.4
Min nTPM: 37.4
Sample A Female 56.4
Sample B Female 37.4
Sample C Male 43.2
Sample D Male 49.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 39.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 38.2
Samples: 4

Max nTPM: 39.7
Min nTPM: 36.2
Sample A Male 38.4
Sample B Male 39.7
Sample C Female 38.3
Sample D Female 36.2
Hippocampal formation
nTPM: 39.2
Samples: 4

Max nTPM: 44.4
Min nTPM: 35.7
Sample A Male 44.4
Sample B Male 37.1
Sample C Female 35.7
Sample D Female 39.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 2.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.4
69734815 Antisense, RP_050503_01_C12, Mouse strain C57BL/6J (56 days, male) 2.4

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