A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
55.3
nTPM
Monaco:
38.4
nTPM
Schmiedel:
35.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.3
HPA sample
nTPM
Memory B-cell nTPM: 55.3
Samples: 6
Max nTPM: 136.0
Min nTPM: 26.3
P10809_1017
26.3
P10809_1025
44.9
P10809_1044
136.0
P10809_1063
31.5
P10809_1092
49.3
P10809_1105
43.6
Naive B-cell nTPM: 50.0
Samples: 6
Max nTPM: 103.4
Min nTPM: 25.3
P10809_1011
25.3
P10809_1029
37.6
P10809_1048
103.4
P10809_1067
40.6
P10809_1091
44.8
P10809_1104
48.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 27.2
Samples: 4
Max nTPM: 32.8
Min nTPM: 16.2
RHH5310_R3677
32.8
RHH5218_R3590
30.6
RHH5247_R3619
29.2
RHH5276_R3648
16.2
Naive B-cell nTPM: 37.1
Samples: 4
Max nTPM: 55.8
Min nTPM: 19.9
RHH5308_R3675
50.4
RHH5216_R3588
55.8
RHH5245_R3617
19.9
RHH5274_R3646
22.4
Non-switched memory B-cell nTPM: 32.0
Samples: 4
Max nTPM: 46.1
Min nTPM: 19.2
RHH5309_R3676
39.6
RHH5217_R3589
46.1
RHH5246_R3618
19.2
RHH5275_R3647
23.1
Plasmablast nTPM: 37.1
Samples: 4
Max nTPM: 45.2
Min nTPM: 28.4
RHH5312_R3679
31.8
RHH5220_R3592
42.9
RHH5249_R3621
45.2
RHH5278_R3650
28.4
Switched memory B-cell nTPM: 38.4
Samples: 4
Max nTPM: 52.8
Min nTPM: 32.6
RHH5311_R3678
52.8
RHH5219_R3591
33.2
RHH5248_R3620
34.8
RHH5277_R3649
32.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.7
Schmiedel sample id
TPM
Naive B-cell TPM: 35.7
Samples: 91
Max TPM: 79.4
Min TPM: 16.7
B_CELL_NAIVE_1
79.4
B_CELL_NAIVE_2
72.3
B_CELL_NAIVE_3
72.0
B_CELL_NAIVE_4
70.3
B_CELL_NAIVE_5
66.4
B_CELL_NAIVE_6
63.1
B_CELL_NAIVE_7
60.5
B_CELL_NAIVE_8
59.6
B_CELL_NAIVE_9
54.4
B_CELL_NAIVE_10
53.7
B_CELL_NAIVE_11
52.8
B_CELL_NAIVE_12
49.5
B_CELL_NAIVE_13
47.6
B_CELL_NAIVE_14
47.1
B_CELL_NAIVE_15
46.7
B_CELL_NAIVE_16
45.5
B_CELL_NAIVE_17
45.5
B_CELL_NAIVE_18
43.6
B_CELL_NAIVE_19
43.0
B_CELL_NAIVE_20
42.6
B_CELL_NAIVE_21
41.2
B_CELL_NAIVE_22
40.8
B_CELL_NAIVE_23
40.7
B_CELL_NAIVE_24
40.0
B_CELL_NAIVE_25
40.0
B_CELL_NAIVE_26
39.8
B_CELL_NAIVE_27
38.6
B_CELL_NAIVE_28
38.5
B_CELL_NAIVE_29
37.9
B_CELL_NAIVE_30
37.5
B_CELL_NAIVE_31
37.0
B_CELL_NAIVE_32
36.5
B_CELL_NAIVE_33
36.4
B_CELL_NAIVE_34
34.8
B_CELL_NAIVE_35
34.7
B_CELL_NAIVE_36
34.5
B_CELL_NAIVE_37
34.4
B_CELL_NAIVE_38
34.0
B_CELL_NAIVE_39
33.8
B_CELL_NAIVE_40
33.7
B_CELL_NAIVE_41
33.7
B_CELL_NAIVE_42
33.4
B_CELL_NAIVE_43
33.0
B_CELL_NAIVE_44
32.1
B_CELL_NAIVE_45
31.7
B_CELL_NAIVE_46
31.0
B_CELL_NAIVE_47
30.8
B_CELL_NAIVE_48
30.7
B_CELL_NAIVE_49
30.6
B_CELL_NAIVE_50
30.2
B_CELL_NAIVE_51
30.2
B_CELL_NAIVE_52
30.1
B_CELL_NAIVE_53
29.8
B_CELL_NAIVE_54
29.6
B_CELL_NAIVE_55
29.1
B_CELL_NAIVE_56
29.0
B_CELL_NAIVE_57
28.8
B_CELL_NAIVE_58
28.7
B_CELL_NAIVE_59
28.5
B_CELL_NAIVE_60
28.3
B_CELL_NAIVE_61
28.0
B_CELL_NAIVE_62
28.0
B_CELL_NAIVE_63
28.0
B_CELL_NAIVE_64
27.8
B_CELL_NAIVE_65
27.8
B_CELL_NAIVE_66
27.5
B_CELL_NAIVE_67
27.5
B_CELL_NAIVE_68
27.5
B_CELL_NAIVE_69
27.3
B_CELL_NAIVE_70
27.3
B_CELL_NAIVE_71
27.1
B_CELL_NAIVE_72
27.0
B_CELL_NAIVE_73
26.2
B_CELL_NAIVE_74
25.0
B_CELL_NAIVE_75
24.9
B_CELL_NAIVE_76
24.7
B_CELL_NAIVE_77
24.4
B_CELL_NAIVE_78
24.3
B_CELL_NAIVE_79
24.1
B_CELL_NAIVE_80
24.1
B_CELL_NAIVE_81
24.1
B_CELL_NAIVE_82
24.0
B_CELL_NAIVE_83
23.8
B_CELL_NAIVE_84
23.6
B_CELL_NAIVE_85
23.5
B_CELL_NAIVE_86
23.3
B_CELL_NAIVE_87
22.5
B_CELL_NAIVE_88
21.9
B_CELL_NAIVE_89
21.5
B_CELL_NAIVE_90
21.3
B_CELL_NAIVE_91
16.7
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The Human Protein Atlas project is funded
