A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
31.2
nTPM
Monaco:
35.3
nTPM
Schmiedel:
23.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.2
HPA sample
nTPM
Classical monocyte nTPM: 29.7
Samples: 6
Max nTPM: 38.8
Min nTPM: 19.2
P10809_1003
19.2
P10809_1020
37.1
P10809_1039
38.8
P10809_1058
24.0
P10809_1080
28.5
P10809_1107
30.4
Intermediate monocyte nTPM: 30.2
Samples: 6
Max nTPM: 41.1
Min nTPM: 22.9
P10809_1004
22.9
P10809_1023
31.9
P10809_1042
33.0
P10809_1061
25.3
P10809_1081
27.2
P10809_1108
41.1
Non-classical monocyte nTPM: 31.3
Samples: 5
Max nTPM: 42.5
Min nTPM: 17.9
P10809_1005
26.7
P10809_1053
42.5
P10809_1072
17.9
P10809_1082
31.6
P10809_1109
37.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.3
Monaco sample
nTPM
Classical monocyte nTPM: 33.5
Samples: 4
Max nTPM: 40.5
Min nTPM: 18.5
RHH5313_R3680
38.3
RHH5221_R3593
18.5
RHH5250_R3622
40.5
RHH5279_R3651
36.8
Intermediate monocyte nTPM: 30.6
Samples: 4
Max nTPM: 46.8
Min nTPM: 15.7
RHH5314_R3681
32.3
RHH5222_R3594
15.7
RHH5251_R3623
27.5
RHH5280_R3652
46.8
Non-classical monocyte nTPM: 35.3
Samples: 4
Max nTPM: 56.5
Min nTPM: 22.7
RHH5315_R3682
29.3
RHH5223_R3595
22.7
RHH5252_R3624
32.5
RHH5281_R3653
56.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.0
Schmiedel sample id
TPM
Classical monocyte TPM: 23.0
Samples: 91
Max TPM: 51.5
Min TPM: 12.2
MONOCYTES_1
51.5
MONOCYTES_2
48.5
MONOCYTES_3
37.7
MONOCYTES_4
35.6
MONOCYTES_5
33.6
MONOCYTES_6
31.4
MONOCYTES_7
31.3
MONOCYTES_8
30.9
MONOCYTES_9
30.5
MONOCYTES_10
30.4
MONOCYTES_11
30.2
MONOCYTES_12
30.2
MONOCYTES_13
29.9
MONOCYTES_14
28.9
MONOCYTES_15
28.7
MONOCYTES_16
28.2
MONOCYTES_17
26.9
MONOCYTES_18
26.5
MONOCYTES_19
26.4
MONOCYTES_20
26.2
MONOCYTES_21
26.2
MONOCYTES_22
26.0
MONOCYTES_23
25.6
MONOCYTES_24
25.5
MONOCYTES_25
25.4
MONOCYTES_26
25.4
MONOCYTES_27
25.4
MONOCYTES_28
25.0
MONOCYTES_29
24.7
MONOCYTES_30
24.6
MONOCYTES_31
24.2
MONOCYTES_32
24.0
MONOCYTES_33
23.9
MONOCYTES_34
23.9
MONOCYTES_35
23.9
MONOCYTES_36
23.1
MONOCYTES_37
23.0
MONOCYTES_38
22.7
MONOCYTES_39
22.7
MONOCYTES_40
22.4
MONOCYTES_41
22.4
MONOCYTES_42
22.4
MONOCYTES_43
22.2
MONOCYTES_44
22.1
MONOCYTES_45
21.9
MONOCYTES_46
21.9
MONOCYTES_47
21.7
MONOCYTES_48
21.6
MONOCYTES_49
21.3
MONOCYTES_50
21.2
MONOCYTES_51
21.2
MONOCYTES_52
21.0
MONOCYTES_53
21.0
MONOCYTES_54
20.9
MONOCYTES_55
20.9
MONOCYTES_56
20.9
MONOCYTES_57
20.8
MONOCYTES_58
20.7
MONOCYTES_59
20.7
MONOCYTES_60
20.3
MONOCYTES_61
20.0
MONOCYTES_62
20.0
MONOCYTES_63
20.0
MONOCYTES_64
19.9
MONOCYTES_65
19.8
MONOCYTES_66
19.7
MONOCYTES_67
19.7
MONOCYTES_68
18.6
MONOCYTES_69
18.5
MONOCYTES_70
18.4
MONOCYTES_71
18.3
MONOCYTES_72
18.1
MONOCYTES_73
18.0
MONOCYTES_74
17.8
MONOCYTES_75
17.5
MONOCYTES_76
17.3
MONOCYTES_77
17.3
MONOCYTES_78
17.2
MONOCYTES_79
17.2
MONOCYTES_80
17.1
MONOCYTES_81
16.7
MONOCYTES_82
16.6
MONOCYTES_83
16.4
MONOCYTES_84
16.2
MONOCYTES_85
16.1
MONOCYTES_86
14.5
MONOCYTES_87
14.5
MONOCYTES_88
14.0
MONOCYTES_89
13.8
MONOCYTES_90
13.4
MONOCYTES_91
12.2
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Non-classical monocyte TPM: 21.7
Samples: 90
Max TPM: 72.6
Min TPM: 12.7
M2_1
72.6
M2_2
64.5
M2_3
52.8
M2_4
34.1
M2_5
33.6
M2_6
33.2
M2_7
32.6
M2_8
31.6
M2_9
29.7
M2_10
28.9
M2_11
28.5
M2_12
28.4
M2_13
28.2
M2_14
27.5
M2_15
26.8
M2_16
25.4
M2_17
25.1
M2_18
25.0
M2_19
24.7
M2_20
23.5
M2_21
23.4
M2_22
23.1
M2_23
23.0
M2_24
22.7
M2_25
22.6
M2_26
22.3
M2_27
22.3
M2_28
22.2
M2_29
22.1
M2_30
21.8
M2_31
21.8
M2_32
21.5
M2_33
20.5
M2_34
20.4
M2_35
20.4
M2_36
20.4
M2_37
20.2
M2_38
19.8
M2_39
19.7
M2_40
19.6
M2_41
19.5
M2_42
19.0
M2_43
18.9
M2_44
18.9
M2_45
18.8
M2_46
18.7
M2_47
18.6
M2_48
18.3
M2_49
18.1
M2_50
18.1
M2_51
18.0
M2_52
18.0
M2_53
18.0
M2_54
17.9
M2_55
17.8
M2_56
17.8
M2_57
17.7
M2_58
17.4
M2_59
17.4
M2_60
17.4
M2_61
17.3
M2_62
17.2
M2_63
17.1
M2_64
17.1
M2_65
17.1
M2_66
17.1
M2_67
17.1
M2_68
16.9
M2_69
16.8
M2_70
16.7
M2_71
16.7
M2_72
16.7
M2_73
16.7
M2_74
16.5
M2_75
16.5
M2_76
16.4
M2_77
16.4
M2_78
16.4
M2_79
16.4
M2_80
16.4
M2_81
16.3
M2_82
16.3
M2_83
15.7
M2_84
15.6
M2_85
15.5
M2_86
14.5
M2_87
14.2
M2_88
13.8
M2_89
13.7
M2_90
12.7
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