On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
135.1
nTPM
HPA Brain:
125.5
nTPM
GTEx:
135.1
nTPM
FANTOM5:
163.8
Scaled Tags Per Million
Macaque:
219.9
nTPM
Mouse:
100.3
nTPM
Pig:
304.4
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
44314
Sample
Intensity
Spinal cord_01
71659
Spinal cord_02
58281
Spinal cord_03
73234
Spinal cord_04
40170
Spinal cord_05
48457
Spinal cord_06
36527
Spinal cord_07
27686
Spinal cord_08
31769
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
125.5
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 115.0
2193
Male, age 75, both hemispheres
127.9
2818
Female, age 79, both hemispheres
118.0
2819
Male, age 47, both hemispheres
108.1
2734
Male, age 80, both hemispheres
105.9
Cervical spinal cord, central gray nTPM: 93.4
2194
Female, age 79, both hemispheres
102.6
1981
Female, age 72, midline
99.7
2816
Male, age 47, midline
95.2
2048
Male, age 55, midline
89.0
2565
Male, age 75, midline
80.3
Cervical spinal cord, dorsal horn nTPM: 106.9
2069
Male, age 47, both hemispheres
119.4
2297
Male, age 75, both hemispheres
112.0
2173
Female, age 72, unknown
107.5
1877
Male, age 55, unknown
106.5
2296
Male, age 66, both hemispheres
104.4
2721
Male, age 90, both hemispheres
92.0
Cervical spinal cord, ventral horn nTPM: 104.1
2098
Female, age 72, unknown
112.8
2295
Male, age 66, both hemispheres
110.9
2480
Male, age 75, both hemispheres
109.4
2820
Female, age 79, both hemispheres
100.5
2809
Male, age 90, both hemispheres
98.6
2068
Male, age 55, unknown
92.1
Dorsal funiculus (white matter) nTPM: 120.9
2128
Male, age 75, both hemispheres
143.2
2810
Male, age 90, both hemispheres
139.4
2817
Male, age 47, both hemispheres
110.8
2812
Male, age 66, both hemispheres
107.1
2064
Female, age 79, both hemispheres
104.1
Lateral funiculus (white matter) nTPM: 125.5
2294
Male, age 66, both hemispheres
133.7
2099
Male, age 90, both hemispheres
131.0
2192
Male, age 75, both hemispheres
129.9
2094
Female, age 79, both hemispheres
107.3
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
135.1
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 135.1
Samples: 204
Max nTPM: 205.5
Min nTPM: 65.8
Std nTPM: 25.3
Median nTPM: 134.6
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
205.5
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
201.2
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
195.9
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
194.5
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
190.2
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
183.4
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
181.7
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
179.4
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
177.9
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
177.9
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
177.6
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
176.6
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
175.6
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
172.9
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
172.5
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
172.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
171.7
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
171.1
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
170.9
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
170.8
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
170.0
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
168.5
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
168.1
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
167.0
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
167.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
166.1
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
164.5
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
163.6
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
163.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
163.1
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
162.5
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
162.1
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
161.9
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
161.6
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
161.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
160.9
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
160.4
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
159.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
158.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
158.2
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
157.3
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
157.0
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
156.9
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
156.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
156.0
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
155.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
153.9
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
153.4
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
151.4
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
150.7
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
150.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
149.9
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
149.6
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
149.4
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
149.1
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
148.7
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
148.1
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
147.8
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
146.8
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
146.4
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
146.4
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
146.3
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
145.9
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
145.5
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
144.9
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
144.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
144.2
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
144.1
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
144.0
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
143.8
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
143.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
143.4
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
143.4
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
142.8
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
142.8
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
142.7
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
141.0
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
140.7
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
140.7
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
140.6
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
140.5
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
140.5
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
140.4
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
140.3
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
139.5
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
138.9
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
138.2
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
138.1
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
137.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
137.5
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
137.3
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
137.3
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
136.1
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
136.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
136.0
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
136.0
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
135.8
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
135.8
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
135.6
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
135.2
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
135.2
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
134.7
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
134.6
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
134.4
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
134.1
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
133.9
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
133.8
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
133.8
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
132.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
132.6
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
132.4
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
131.8
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
131.7
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
131.6
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
131.3
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
131.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
131.2
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
131.0
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
130.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
130.0
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
129.9
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
129.8
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
129.6
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
129.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
129.2
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
128.7
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
128.3
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
127.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
127.1
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
126.5
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
126.5
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
125.8
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
125.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
125.1
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
125.1
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
124.7
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
124.6
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
124.6
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
123.5
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
123.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
123.3
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
123.3
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
123.2
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
123.0
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
122.4
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
120.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
120.7
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
120.4
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
119.8
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
119.5
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
119.5
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
119.4
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
118.0
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
117.9
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
117.5
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
117.2
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
116.0
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
115.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
115.7
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
115.7
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
115.7
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
115.1
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
114.9
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
114.4
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
114.1
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
114.1
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
114.0
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
113.9
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
110.9
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
110.3
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
110.1
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
110.0
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
109.0
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
108.2
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
107.4
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
106.2
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
106.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
104.8
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
104.2
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
101.9
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
101.5
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
101.3
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
100.6
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
100.2
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
100.0
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
98.3
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
98.2
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
97.0
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
96.7
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
96.7
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
96.4
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
95.4
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
94.9
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
94.3
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
94.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
94.0
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
92.7
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
90.9
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
90.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
87.3
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
86.4
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
84.3
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
79.4
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
65.8
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
219.9
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 205.0
Samples: 2
Max nTPM: 226.7
Min nTPM: 183.3
Sample A
226.7
Sample B
183.3
Ventral spinal cord nTPM: 219.9
Samples: 1
Max nTPM: 219.9
Min nTPM: 219.9
Sample A
219.9
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
304.4
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 296.8
Samples: 4
Max nTPM: 342.8
Min nTPM: 242.9
Sample A
Female
242.9
Sample B
Female
326.2
Sample C
Male
342.8
Sample D
Male
275.2
Ventral spinal cord nTPM: 304.4
Samples: 4
Max nTPM: 354.9
Min nTPM: 273.7
Sample A
Female
273.7
Sample B
Female
306.0
Sample C
Male
282.9
Sample D
Male
354.9
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
100.3
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 100.3
Samples: 4
Max nTPM: 114.0
Min nTPM: 89.2
Sample A
114.0
Sample B
89.2
Sample C
98.3
Sample D
99.8
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The Human Protein Atlas project is funded
