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IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:36.8 nTPM
Monaco:215.1 nTPM
Schmiedel:292.8 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

36.8
HPA sample nTPM
Memory B-cell
nTPM: 34.7
Samples: 6

Max nTPM: 81.0
Min nTPM: 5.8
P10809_1017 48.6
P10809_1025 22.5
P10809_1044 5.8
P10809_1063 30.3
P10809_1092 20.1
P10809_1105 81.0
Naive B-cell
nTPM: 36.8
Samples: 6

Max nTPM: 68.4
Min nTPM: 20.4
P10809_1011 43.1
P10809_1029 20.4
P10809_1048 32.1
P10809_1067 33.9
P10809_1091 22.6
P10809_1104 68.4

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

215.1
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 191.7
Samples: 4

Max nTPM: 228.9
Min nTPM: 118.1
RHH5310_R3677 228.9
RHH5218_R3590 216.6
RHH5247_R3619 203.0
RHH5276_R3648 118.1
Naive B-cell
nTPM: 181.2
Samples: 4

Max nTPM: 213.8
Min nTPM: 168.6
RHH5308_R3675 168.6
RHH5216_R3588 213.8
RHH5245_R3617 173.8
RHH5274_R3646 168.7
Non-switched memory B-cell
nTPM: 184.0
Samples: 4

Max nTPM: 208.6
Min nTPM: 154.8
RHH5309_R3676 208.6
RHH5217_R3589 203.6
RHH5246_R3618 168.8
RHH5275_R3647 154.8
Plasmablast
nTPM: 146.7
Samples: 4

Max nTPM: 168.5
Min nTPM: 130.7
RHH5312_R3679 168.5
RHH5220_R3592 144.7
RHH5249_R3621 142.8
RHH5278_R3650 130.7
Switched memory B-cell
nTPM: 215.1
Samples: 4

Max nTPM: 270.8
Min nTPM: 167.6
RHH5311_R3678 205.3
RHH5219_R3591 216.7
RHH5248_R3620 270.8
RHH5277_R3649 167.6

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

292.8
Schmiedel sample id TPM
Naive B-cell
TPM: 292.8
Samples: 91

Max TPM: 463.1
Min TPM: 183.1
B_CELL_NAIVE_1 463.1
B_CELL_NAIVE_2 431.9
B_CELL_NAIVE_3 412.0
B_CELL_NAIVE_4 407.3
B_CELL_NAIVE_5 399.9
B_CELL_NAIVE_6 393.2
B_CELL_NAIVE_7 373.1
B_CELL_NAIVE_8 356.9
B_CELL_NAIVE_9 347.1
B_CELL_NAIVE_10 345.4
B_CELL_NAIVE_11 343.2
B_CELL_NAIVE_12 340.3
B_CELL_NAIVE_13 334.0
B_CELL_NAIVE_14 332.4
B_CELL_NAIVE_15 331.3
B_CELL_NAIVE_16 327.8
B_CELL_NAIVE_17 321.6
B_CELL_NAIVE_18 320.4
B_CELL_NAIVE_19 319.3
B_CELL_NAIVE_20 319.3
B_CELL_NAIVE_21 315.7
B_CELL_NAIVE_22 315.0
B_CELL_NAIVE_23 310.1
B_CELL_NAIVE_24 309.8
B_CELL_NAIVE_25 309.8
B_CELL_NAIVE_26 309.1
B_CELL_NAIVE_27 308.8
B_CELL_NAIVE_28 307.3
B_CELL_NAIVE_29 306.1
B_CELL_NAIVE_30 304.9
B_CELL_NAIVE_31 304.5
B_CELL_NAIVE_32 302.9
B_CELL_NAIVE_33 300.9
B_CELL_NAIVE_34 299.2
B_CELL_NAIVE_35 296.1
B_CELL_NAIVE_36 295.1
B_CELL_NAIVE_37 292.9
B_CELL_NAIVE_38 292.6
B_CELL_NAIVE_39 291.5
B_CELL_NAIVE_40 290.3
B_CELL_NAIVE_41 289.6
B_CELL_NAIVE_42 289.4
B_CELL_NAIVE_43 286.8
B_CELL_NAIVE_44 285.5
B_CELL_NAIVE_45 283.0
B_CELL_NAIVE_46 281.8
B_CELL_NAIVE_47 281.0
B_CELL_NAIVE_48 280.6
B_CELL_NAIVE_49 280.5
B_CELL_NAIVE_50 280.0
B_CELL_NAIVE_51 279.7
B_CELL_NAIVE_52 279.2
B_CELL_NAIVE_53 276.4
B_CELL_NAIVE_54 276.0
B_CELL_NAIVE_55 276.0
B_CELL_NAIVE_56 274.1
B_CELL_NAIVE_57 272.8
B_CELL_NAIVE_58 272.8
B_CELL_NAIVE_59 272.2
B_CELL_NAIVE_60 271.4
B_CELL_NAIVE_61 270.6
B_CELL_NAIVE_62 270.5
B_CELL_NAIVE_63 269.5
B_CELL_NAIVE_64 266.4
B_CELL_NAIVE_65 265.4
B_CELL_NAIVE_66 265.2
B_CELL_NAIVE_67 264.8
B_CELL_NAIVE_68 263.1
B_CELL_NAIVE_69 263.0
B_CELL_NAIVE_70 261.0
B_CELL_NAIVE_71 261.0
B_CELL_NAIVE_72 257.6
B_CELL_NAIVE_73 257.5
B_CELL_NAIVE_74 257.0
B_CELL_NAIVE_75 254.7
B_CELL_NAIVE_76 254.4
B_CELL_NAIVE_77 251.5
B_CELL_NAIVE_78 251.5
B_CELL_NAIVE_79 250.9
B_CELL_NAIVE_80 246.6
B_CELL_NAIVE_81 245.8
B_CELL_NAIVE_82 245.4
B_CELL_NAIVE_83 244.3
B_CELL_NAIVE_84 243.2
B_CELL_NAIVE_85 242.5
B_CELL_NAIVE_86 240.4
B_CELL_NAIVE_87 237.5
B_CELL_NAIVE_88 233.3
B_CELL_NAIVE_89 229.8
B_CELL_NAIVE_90 229.5
B_CELL_NAIVE_91 183.1
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