A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
138.2
nTPM
Monaco:
300.4
nTPM
Schmiedel:
678.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
138.2
HPA sample
nTPM
Classical monocyte nTPM: 70.2
Samples: 6
Max nTPM: 121.2
Min nTPM: 35.3
P10809_1003
72.6
P10809_1020
35.3
P10809_1039
41.9
P10809_1058
78.6
P10809_1080
71.7
P10809_1107
121.2
Intermediate monocyte nTPM: 111.3
Samples: 6
Max nTPM: 195.2
Min nTPM: 83.8
P10809_1004
104.1
P10809_1023
84.4
P10809_1042
93.4
P10809_1061
83.8
P10809_1081
107.0
P10809_1108
195.2
Non-classical monocyte nTPM: 138.2
Samples: 5
Max nTPM: 207.4
Min nTPM: 86.1
P10809_1005
124.5
P10809_1053
96.0
P10809_1072
86.1
P10809_1082
177.1
P10809_1109
207.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
300.4
Monaco sample
nTPM
Classical monocyte nTPM: 284.8
Samples: 4
Max nTPM: 332.5
Min nTPM: 232.1
RHH5313_R3680
232.1
RHH5221_R3593
312.4
RHH5250_R3622
332.5
RHH5279_R3651
262.2
Intermediate monocyte nTPM: 285.2
Samples: 4
Max nTPM: 324.0
Min nTPM: 221.0
RHH5314_R3681
288.8
RHH5222_R3594
221.0
RHH5251_R3623
306.8
RHH5280_R3652
324.0
Non-classical monocyte nTPM: 300.4
Samples: 4
Max nTPM: 355.3
Min nTPM: 254.0
RHH5315_R3682
257.1
RHH5223_R3595
254.0
RHH5252_R3624
335.3
RHH5281_R3653
355.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
678.8
Schmiedel sample id
TPM
Classical monocyte TPM: 418.7
Samples: 91
Max TPM: 518.1
Min TPM: 325.3
MONOCYTES_1
518.1
MONOCYTES_2
517.2
MONOCYTES_3
512.4
MONOCYTES_4
499.2
MONOCYTES_5
499.0
MONOCYTES_6
498.7
MONOCYTES_7
489.9
MONOCYTES_8
486.4
MONOCYTES_9
482.9
MONOCYTES_10
481.0
MONOCYTES_11
475.4
MONOCYTES_12
473.7
MONOCYTES_13
470.6
MONOCYTES_14
470.2
MONOCYTES_15
462.0
MONOCYTES_16
459.1
MONOCYTES_17
459.0
MONOCYTES_18
457.2
MONOCYTES_19
457.1
MONOCYTES_20
456.7
MONOCYTES_21
456.0
MONOCYTES_22
452.9
MONOCYTES_23
450.5
MONOCYTES_24
449.1
MONOCYTES_25
446.5
MONOCYTES_26
443.4
MONOCYTES_27
442.1
MONOCYTES_28
440.6
MONOCYTES_29
440.4
MONOCYTES_30
437.2
MONOCYTES_31
435.2
MONOCYTES_32
434.8
MONOCYTES_33
434.5
MONOCYTES_34
433.3
MONOCYTES_35
432.2
MONOCYTES_36
430.0
MONOCYTES_37
428.0
MONOCYTES_38
427.2
MONOCYTES_39
426.4
MONOCYTES_40
425.5
MONOCYTES_41
425.2
MONOCYTES_42
425.1
MONOCYTES_43
424.3
MONOCYTES_44
422.7
MONOCYTES_45
422.2
MONOCYTES_46
420.6
MONOCYTES_47
419.5
MONOCYTES_48
417.6
MONOCYTES_49
417.5
MONOCYTES_50
417.4
MONOCYTES_51
412.7
MONOCYTES_52
412.1
MONOCYTES_53
412.0
MONOCYTES_54
408.5
MONOCYTES_55
407.6
MONOCYTES_56
407.5
MONOCYTES_57
406.7
MONOCYTES_58
405.7
MONOCYTES_59
404.9
MONOCYTES_60
403.7
MONOCYTES_61
401.7
MONOCYTES_62
398.8
MONOCYTES_63
396.5
MONOCYTES_64
394.6
MONOCYTES_65
392.4
MONOCYTES_66
390.7
MONOCYTES_67
387.1
MONOCYTES_68
387.0
MONOCYTES_69
384.9
MONOCYTES_70
384.5
MONOCYTES_71
382.1
MONOCYTES_72
381.6
MONOCYTES_73
378.8
MONOCYTES_74
377.6
MONOCYTES_75
365.5
MONOCYTES_76
362.7
MONOCYTES_77
360.2
MONOCYTES_78
359.1
MONOCYTES_79
358.7
MONOCYTES_80
357.6
MONOCYTES_81
357.5
MONOCYTES_82
354.7
MONOCYTES_83
353.7
MONOCYTES_84
353.1
MONOCYTES_85
352.0
MONOCYTES_86
348.5
MONOCYTES_87
346.9
MONOCYTES_88
345.8
MONOCYTES_89
342.1
MONOCYTES_90
334.4
MONOCYTES_91
325.3
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Non-classical monocyte TPM: 678.8
Samples: 90
Max TPM: 945.9
Min TPM: 433.9
M2_1
945.9
M2_2
920.3
M2_3
907.3
M2_4
891.2
M2_5
879.9
M2_6
868.8
M2_7
834.1
M2_8
832.7
M2_9
816.8
M2_10
816.3
M2_11
807.3
M2_12
801.7
M2_13
792.6
M2_14
769.8
M2_15
763.2
M2_16
757.8
M2_17
756.3
M2_18
743.8
M2_19
740.8
M2_20
737.3
M2_21
731.0
M2_22
726.4
M2_23
722.7
M2_24
722.2
M2_25
721.0
M2_26
717.3
M2_27
716.2
M2_28
712.2
M2_29
711.8
M2_30
710.2
M2_31
707.5
M2_32
701.4
M2_33
701.2
M2_34
696.7
M2_35
696.6
M2_36
693.6
M2_37
687.9
M2_38
686.4
M2_39
681.3
M2_40
680.2
M2_41
671.2
M2_42
669.9
M2_43
666.6
M2_44
666.5
M2_45
664.4
M2_46
659.5
M2_47
650.3
M2_48
645.4
M2_49
644.3
M2_50
643.9
M2_51
643.7
M2_52
642.2
M2_53
640.8
M2_54
639.0
M2_55
637.3
M2_56
636.1
M2_57
634.4
M2_58
634.0
M2_59
633.4
M2_60
630.1
M2_61
624.7
M2_62
623.6
M2_63
622.7
M2_64
621.6
M2_65
619.6
M2_66
618.4
M2_67
618.1
M2_68
614.2
M2_69
601.9
M2_70
601.7
M2_71
600.9
M2_72
599.6
M2_73
598.8
M2_74
598.5
M2_75
597.6
M2_76
595.3
M2_77
595.1
M2_78
591.5
M2_79
589.8
M2_80
588.3
M2_81
586.4
M2_82
585.0
M2_83
580.8
M2_84
574.1
M2_85
570.1
M2_86
562.6
M2_87
562.6
M2_88
543.5
M2_89
513.0
M2_90
433.9
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