A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.7
nTPM
Monaco:
50.5
nTPM
Schmiedel:
80.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.7
HPA sample
nTPM
NK-cell nTPM: 7.8
Samples: 6
Max nTPM: 19.0
Min nTPM: 2.8
P10809_1013
2.8
P10809_1033
7.9
P10809_1052
7.4
P10809_1071
3.1
P10809_1093
19.0
P10809_1103
6.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
50.5
Monaco sample
nTPM
NK-cell nTPM: 50.5
Samples: 4
Max nTPM: 64.3
Min nTPM: 41.0
RHH5316_R3683
64.3
RHH5224_R3596
45.9
RHH5253_R3625
41.0
RHH5282_R3654
50.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
80.3
Schmiedel sample id
TPM
NK-cell TPM: 80.3
Samples: 90
Max TPM: 114.8
Min TPM: 44.3
NK_1
114.8
NK_2
114.3
NK_3
110.5
NK_4
103.9
NK_5
101.6
NK_6
100.1
NK_7
99.5
NK_8
97.2
NK_9
95.7
NK_10
94.2
NK_11
93.3
NK_12
91.8
NK_13
91.8
NK_14
91.4
NK_15
91.2
NK_16
90.9
NK_17
89.8
NK_18
89.7
NK_19
89.5
NK_20
89.3
NK_21
89.1
NK_22
88.9
NK_23
88.4
NK_24
87.7
NK_25
87.6
NK_26
87.5
NK_27
87.3
NK_28
86.6
NK_29
85.8
NK_30
85.4
NK_31
85.1
NK_32
85.1
NK_33
84.8
NK_34
84.7
NK_35
84.5
NK_36
84.1
NK_37
83.7
NK_38
83.3
NK_39
82.5
NK_40
82.3
NK_41
81.8
NK_42
81.2
NK_43
81.2
NK_44
80.7
NK_45
80.7
NK_46
80.7
NK_47
79.9
NK_48
78.9
NK_49
78.8
NK_50
78.7
NK_51
77.7
NK_52
77.3
NK_53
77.2
NK_54
76.0
NK_55
75.8
NK_56
75.6
NK_57
74.8
NK_58
74.7
NK_59
74.5
NK_60
74.4
NK_61
74.1
NK_62
73.8
NK_63
73.2
NK_64
72.9
NK_65
71.0
NK_66
70.6
NK_67
70.5
NK_68
70.0
NK_69
69.7
NK_70
69.6
NK_71
69.6
NK_72
69.5
NK_73
69.4
NK_74
69.4
NK_75
69.1
NK_76
69.0
NK_77
67.5
NK_78
67.4
NK_79
67.3
NK_80
67.2
NK_81
66.0
NK_82
65.4
NK_83
65.4
NK_84
63.4
NK_85
63.4
NK_86
63.0
NK_87
59.7
NK_88
59.1
NK_89
58.7
NK_90
44.3
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