We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
NCK2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • NCK2
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:18.7 nTPM
HPA Brain:42.7 nTPM
GTEx:18.7 nTPM
FANTOM5:25.4 Scaled Tags Per Million
Pig:23.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 31.1
2565 Male, age 75, midline 37.0
2194 Female, age 79, both hemispheres 32.4
2816 Male, age 47, midline 30.6
2048 Male, age 55, midline 28.8
1981 Female, age 72, midline 26.9
Cervical spinal cord, dorsal horn
nTPM: 32.3
2297 Male, age 75, both hemispheres 48.3
2721 Male, age 90, both hemispheres 41.0
2069 Male, age 47, both hemispheres 31.4
2173 Female, age 72, unknown 27.1
1877 Male, age 55, unknown 26.8
2296 Male, age 66, both hemispheres 19.0
Cervical spinal cord, ventral horn
nTPM: 42.7
2480 Male, age 75, both hemispheres 54.0
2295 Male, age 66, both hemispheres 52.9
2809 Male, age 90, both hemispheres 52.3
2820 Female, age 79, both hemispheres 33.1
2068 Male, age 55, unknown 32.8
2098 Female, age 72, unknown 30.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

18.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 18.7
Samples: 204

Max nTPM: 44.4
Min nTPM: 11.5
Std nTPM: 5.1
Median nTPM: 17.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 44.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 41.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 33.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 32.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 31.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 30.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 30.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 30.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 29.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 28.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 28.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 27.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 27.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 27.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 26.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 26.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 26.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 25.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 25.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 25.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 25.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 25.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 25.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 25.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 24.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 24.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 24.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 24.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 24.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 24.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 23.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 23.8
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 23.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 23.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 23.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 23.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 23.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 23.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 23.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 23.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 22.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 22.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 22.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 22.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 22.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 22.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 22.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 22.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 21.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 21.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 21.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 21.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 21.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 21.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 21.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 21.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 20.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 20.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 20.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 20.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 20.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 20.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 20.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 19.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 19.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 19.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 19.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 19.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 19.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 19.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 19.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 19.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 19.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 19.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 18.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 18.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 18.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 18.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 18.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 18.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 18.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 18.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 18.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 18.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 18.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 18.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 17.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 17.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 17.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 17.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 17.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 17.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 17.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 17.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 17.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 17.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 17.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 17.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 17.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 17.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 17.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 17.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 17.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 17.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 16.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 16.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 16.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 16.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 16.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 16.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 16.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 16.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 16.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 16.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 16.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 16.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 16.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 16.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 16.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 16.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 16.3
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 16.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 16.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 16.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 16.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 16.1
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 16.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 16.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 16.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 16.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 16.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 16.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 15.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 15.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 15.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 15.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 15.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 15.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 15.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 15.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 15.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 15.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 15.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 15.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 15.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 15.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 15.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 15.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 15.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 15.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 15.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 15.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 15.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 15.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 15.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 15.1
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 15.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 15.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 15.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 14.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 14.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 14.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 14.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 14.7
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 14.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 14.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 14.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 14.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 14.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 14.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 14.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 14.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 14.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 14.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 14.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 14.2
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 14.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 14.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 14.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 14.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 14.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 14.0
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 13.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 13.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 13.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 13.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 13.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 13.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 13.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 13.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 13.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 13.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 12.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 12.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 12.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 12.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 12.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 12.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 12.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 12.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 11.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 11.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 11.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 11.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

25.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 25.4
FF:10159-103A6 76 years, female 26.1
FF:10181-103D1 60 years, female 24.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

23.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 23.8
Samples: 4

Max nTPM: 28.0
Min nTPM: 18.8
Sample A Female 18.8
Sample B Female 22.7
Sample C Male 28.0
Sample D Male 25.8
Ventral spinal cord
nTPM: 22.2
Samples: 4

Max nTPM: 23.3
Min nTPM: 21.1
Sample A Female 21.1
Sample B Female 21.6
Sample C Male 22.7
Sample D Male 23.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo