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TISSUE PRIMARY DATA KIDNEY Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Kidney
Tissue proteome
Kidney
Tissue methods
KIDNEY - Expression summary
Protein expression
Kidneyi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Cells in glomeruli: Medium
Cells in tubules: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2416.4 nTPM
HPA:1046.7 nTPM
GTEx:2416.4 nTPM
FANTOM5:114.7 Scaled Tags Per Million
KIDNEY - SINGLE CELL RNA EXPRESSION
Explore single cell type data

KIDNEY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA072263
Cells in glomeruli Medium
Cells in tubules Medium



KIDNEY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1046.7
overview
Female, age 58
Kidney sample 55
nTPM: 1102.6
Cell types%
Cells in tubules:
60

Cells in glomeruli:
20

Fibroblasts:
5

Other cell types:
15

overview
Female, age 67
Kidney sample 56
nTPM: 1208.7
Cell types%
Cells in tubules:
70

Cells in glomeruli:
15

Fibroblasts:
10

Other cell types:
5

overview
Female, age 55
Kidney sample 57
nTPM: 1096.7
Cell types%
Cells in tubules:
80

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
5

overview
Male, age 46
Kidney sample 58
nTPM: 1294.6
Cell types%
Cells in tubules:
60

Cells in glomeruli:
25

Fibroblasts:
5

Other cell types:
10

overview
Female, age 57
Kidney sample 358
nTPM: 1009
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Male, age 78
Kidney sample 377
nTPM: 892.1
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
20

overview
Male, age 73
Kidney sample 380
nTPM: 1362.8
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Female, age 59
Kidney sample 394
nTPM: 435.5
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
15

overview
Female, age 48
Kidney sample 414
nTPM: 1017.9
Cell types%
Cells in tubules:
60

Cells in glomeruli:
5

Fibroblasts:
10

Other cell types:
25


KIDNEY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2416.4
GTEx sample id Sample description nTPM
Kidney - Cortex
Average nTPM: 2021.1
Samples: 104

Max nTPM: 4132.1
Min nTPM: 1021.9
Std nTPM: 621.7
Median nTPM: 1862.9
GTEX-11TTK-1926-SM-5PNW8 60-69 years, female 4132.1
GTEX-13NYB-1726-SM-5N9G2 40-49 years, male 3369.5
GTEX-1JJE9-1026-SM-HL9TH 70-79 years, male 3361.4
GTEX-1O9I2-1926-SM-F2TBQ 50-59 years, male 3322.6
GTEX-T6MN-1826-SM-EXOHN 50-59 years, male 3231.5
GTEX-15DCD-1926-SM-HAV33 70-79 years, female 3203.0
GTEX-13RTJ-2226-SM-5S2Q1 60-69 years, male 3132.3
GTEX-14E6D-2526-SM-5YYA9 50-59 years, male 3100.5
GTEX-1PWST-2226-SM-EVR3G 70-79 years, male 3042.7
GTEX-1JMQJ-1726-SM-E9U4V 50-59 years, male 3039.6
GTEX-1JMPZ-1226-SM-ARU8Y 30-39 years, male 3011.2
GTEX-17F97-1926-SM-7IGM4 50-59 years, male 2999.1
GTEX-WL46-1926-SM-GNIN6 50-59 years, male 2997.6
GTEX-1N2DW-1826-SM-EAZ54 50-59 years, male 2968.0
GTEX-ZYT6-2226-SM-5GIC9 30-39 years, male 2794.2
GTEX-1LH75-1326-SM-F2I1R 50-59 years, female 2745.5
GTEX-1CB4J-1926-SM-7MGX8 60-69 years, male 2726.9
GTEX-1117F-2126-SM-GIN9G 60-69 years, female 2653.5
GTEX-1QP6S-1526-SM-EXUSG 40-49 years, male 2652.7
GTEX-17HHY-2326-SM-7KFSR 50-59 years, male 2562.1
GTEX-ZDXO-0226-SM-4WKH7 60-69 years, male 2512.3
GTEX-13OVL-1826-SM-5KLZR 50-59 years, male 2480.2
GTEX-15CHQ-2126-SM-6871M 60-69 years, male 2465.6
GTEX-1NV8Z-2226-SM-EXOJ2 60-69 years, male 2438.1
GTEX-T5JC-1526-SM-4DM68 20-29 years, male 2413.1
GTEX-11OF3-1326-SM-5N9FJ 60-69 years, male 2357.8
GTEX-14C5O-2026-SM-5YYB1 60-69 years, male 2356.3
GTEX-1J1OQ-1426-SM-AHZ3P 40-49 years, female 2334.7
GTEX-1C6VQ-2326-SM-7IGN1 50-59 years, male 2312.5
GTEX-1ICLY-2026-SM-GA913 50-59 years, male 2288.1
GTEX-1JMQK-1926-SM-CJI3B 60-69 years, male 2268.4
GTEX-1KWVE-0826-SM-CXZKO 30-39 years, male 2260.3
GTEX-1399S-0526-SM-5IJG8 30-39 years, female 2254.9
GTEX-1GTWX-1826-SM-9QEHG 60-69 years, male 2189.5
GTEX-13112-2126-SM-5GCO4 50-59 years, male 2178.7
GTEX-1RQEC-2426-SM-F2I1J 60-69 years, male 2174.9
GTEX-1GN1U-2126-SM-AHZ4J 50-59 years, female 2124.0
GTEX-14PJ2-1826-SM-HL9UB 50-59 years, male 2121.5
GTEX-1HB9E-1826-SM-D4P33 50-59 years, male 2104.6
GTEX-1R9PO-1626-SM-E6CPT 60-69 years, female 2083.1
GTEX-17F96-1926-SM-7MGWY 70-79 years, male 2057.6
GTEX-1F48J-2226-SM-7MXTN 50-59 years, female 2043.1
GTEX-1GF9V-1926-SM-9JGHE 60-69 years, male 1988.0
GTEX-1OJC4-2326-SM-DTXA5 50-59 years, female 1987.9
GTEX-13FHP-2126-SM-GIN8J 50-59 years, male 1987.8
GTEX-16XZY-1026-SM-HAV39 70-79 years, male 1947.3
GTEX-QDT8-1726-SM-EYYV6 30-39 years, female 1946.2
GTEX-1QAET-2126-SM-F2TBS 50-59 years, male 1932.6
GTEX-ZXG5-2026-SM-HAUZV 60-69 years, male 1930.5
GTEX-1GF9W-1326-SM-7P8PX 60-69 years, male 1909.7
GTEX-O5YV-1226-SM-EV795 60-69 years, female 1894.1
GTEX-1EKGG-2226-SM-7IGOA 60-69 years, male 1868.6
GTEX-W5X1-1626-SM-H7OGO 40-49 years, female 1857.1
GTEX-1A8FM-2026-SM-7P8RN 50-59 years, female 1841.2
GTEX-13OVI-1126-SM-5KLZF 60-69 years, female 1819.2
GTEX-1LG7Y-2726-SM-D5OVW 50-59 years, male 1815.4
GTEX-1IL2V-1826-SM-ARU7R 70-79 years, male 1811.7
GTEX-ZE9C-1426-SM-4WKGM 60-69 years, male 1810.2
GTEX-QDVN-1726-SM-HL9TO 50-59 years, male 1805.5
GTEX-1BAJH-1826-SM-731DA 70-79 years, male 1793.9
GTEX-1E2YA-1626-SM-7MGXS 50-59 years, male 1787.3
GTEX-15DYW-2026-SM-6AJBD 60-69 years, female 1780.2
GTEX-16XZZ-2226-SM-HAV34 60-69 years, male 1762.9
GTEX-RN64-1626-SM-48FD7 50-59 years, male 1752.7
GTEX-14JG1-2326-SM-HAUZ5 40-49 years, male 1747.7
GTEX-1A3MW-2226-SM-73KUX 60-69 years, female 1714.7
GTEX-147F4-2626-SM-5Q5CS 50-59 years, male 1712.1
GTEX-13O1R-2526-SM-5N9FW 60-69 years, male 1706.5
GTEX-1IKK5-0926-SM-A9G2U 60-69 years, male 1705.4
GTEX-14C39-2126-SM-664OH 40-49 years, male 1691.8
GTEX-ZLFU-0926-SM-5P9F8 40-49 years, male 1690.8
GTEX-1HCVE-2126-SM-HL9UO 50-59 years, male 1684.7
GTEX-16MT8-1926-SM-7EPGL 60-69 years, female 1682.3
GTEX-1I1GP-1926-SM-CNNQU 50-59 years, male 1674.1
GTEX-1HBPI-2026-SM-CE6RZ 50-59 years, male 1638.8
GTEX-S33H-1426-SM-EZ6L7 30-39 years, male 1619.7
GTEX-REY6-1826-SM-EAZAT 60-69 years, male 1607.9
GTEX-13OW6-1826-SM-5N9F9 50-59 years, male 1597.2
GTEX-1H3NZ-2126-SM-9WPQ6 60-69 years, male 1577.0
GTEX-1GMR3-2426-SM-7MXV2 40-49 years, male 1520.1
GTEX-ZVZP-0926-SM-5GIDB 50-59 years, male 1503.2
GTEX-12696-0926-SM-5FQTV 60-69 years, male 1475.0
GTEX-1HCU7-1826-SM-A9G2A 50-59 years, male 1465.3
GTEX-ZC5H-1726-SM-5HL7X 40-49 years, female 1456.1
GTEX-16Z82-2826-SM-HAUZZ 60-69 years, male 1452.6
GTEX-13O3O-1726-SM-GJ3RL 60-69 years, female 1423.9
GTEX-QLQW-1626-SM-CMKFE 30-39 years, male 1406.8
GTEX-1MUQO-2526-SM-E9TJN 60-69 years, male 1402.6
GTEX-11GS4-2326-SM-5A5KS 60-69 years, male 1388.9
GTEX-ZYFG-1626-SM-5GZYY 60-69 years, female 1369.4
GTEX-1H3VY-1926-SM-9JGHJ 50-59 years, male 1343.2
GTEX-Y5V5-1226-SM-EYYVP 60-69 years, female 1325.7
GTEX-1N2EF-1426-SM-EXUSH 60-69 years, male 1295.7
GTEX-145MN-0326-SM-5QGQI 30-39 years, male 1288.6
GTEX-1AX8Z-2326-SM-731CR 60-69 years, male 1286.9
GTEX-P4QS-1126-SM-3NMD5 60-69 years, male 1284.8
GTEX-1JJ6O-2526-SM-AHZ3J 60-69 years, male 1276.9
GTEX-1JMLX-1526-SM-AHZ3N 50-59 years, male 1253.6
GTEX-XPVG-0526-SM-4B65N 50-59 years, male 1236.9
GTEX-NFK9-1826-SM-HL9T3 40-49 years, male 1217.3
GTEX-Y5V6-2026-SM-5IFHO 60-69 years, male 1204.1
GTEX-1K9T9-1826-SM-CXZK2 50-59 years, female 1182.3
GTEX-12WSG-0826-SM-5EQ5A 50-59 years, female 1163.5
GTEX-1497J-0826-SM-5NQAJ 60-69 years, male 1021.9
Show allShow less
Kidney - Medulla
Average nTPM: 2416.4
Samples: 11

Max nTPM: 5359.8
Min nTPM: 1261.7
Std nTPM: 1121.7
Median nTPM: 2208.8
GTEX-N7MS-1526-SM-HAUZP 60-69 years, male 5359.8
GTEX-QEG5-2026-SM-H6Q6I 20-29 years, male 3550.7
GTEX-T6MN-1926-SM-GOQYD 50-59 years, male 2644.0
GTEX-T5JC-1626-SM-EZ6KW 20-29 years, male 2445.6
GTEX-RU72-1926-SM-EAZ3F 50-59 years, female 2309.8
GTEX-SIU8-1926-SM-H7OG4 50-59 years, male 2208.8
GTEX-R55E-2026-SM-EZ6L1 20-29 years, male 2033.7
GTEX-QEG4-1526-SM-GPRWK 30-39 years, male 1988.8
GTEX-S33H-1526-SM-GQ1CB 30-39 years, male 1456.5
GTEX-TKQ2-0626-SM-EZ6LB 50-59 years, male 1320.4
GTEX-P4QS-1226-SM-HPAG8 60-69 years, male 1261.7
Show allShow less

KIDNEY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

114.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Kidney
Scaled Tags Per Million: 114.7
FF:10017-101C8 60,62,63 years, female 114.7

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