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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:588.9 nTPM
GTEx:588.9 nTPM
FANTOM5:68.3 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

588.9
GTEx sample id Sample description nTPM
Retina
Average nTPM: 588.9
Samples: 105

Max nTPM: 837.8
Min nTPM: 381.1
Std nTPM: 89.7
Median nTPM:
379_1 60 years, male 837.8
384_1 83 years, male 812.9
375_1 74 years, female 758.0
321_1 62 years, female 756.3
376_1 75 years, female 747.0
237_1 82 years, male 743.8
389_1 86 years, female 731.5
322_1 76 years, male 727.7
35_1 74 years, female 727.6
246_1 77 years, male 721.2
452_1 88 years, female 710.4
120_1 70 years, female 704.4
173_1 67 years, male 701.3
153_1 70 years, female 699.0
320_1 89 years, female 696.1
307_1 66 years, female 695.6
377_1 82 years, female 688.7
347_1 72 years, male 682.0
145_1 84 years, male 674.6
396_1 62 years, male 671.5
4_1 88 years, female 668.3
17_1 71 years, male 667.4
526_1 61 years, male 663.2
394_1 75 years, female 660.0
189_1 76 years, male 656.7
495_1 57 years, female 651.1
2_1 77 years, female 649.8
137_1 83 years, male 644.7
319_1 81 years, male 642.1
386_1 76 years, male 637.8
447_1 81 years, male 632.0
315_1 62 years, female 630.8
126_1 63 years, male 629.3
308_1 70 years, female 629.2
311_1 78 years, male 623.0
404_1 82 years, female 619.8
218_1 71 years, female 617.5
499_1 55 years, female 614.9
109_1 81 years, female 614.2
265_1 87 years, male 611.4
266_1 85 years, male 607.7
139_1 64 years, female 606.6
177_1 74 years, male 603.1
501_1 88 years, male 595.1
518_1 75 years, female 593.2
314_1 67 years, male 591.9
355_1 70 years, female 591.6
229_1 69 years, female 588.6
317_1 60 years, male 588.6
42_1 85 years, male 588.1
348_1 84 years, male 586.8
119_1 70 years, female 585.3
405_1 91 years, male 584.1
254_1 77 years, female 583.8
6_1 73 years, female 578.8
316_1 62 years, male 578.1
243_1 75 years, male 575.9
288_1 66 years, female 573.3
217_1 76 years, male 572.8
295_1 61 years, female 568.2
351_1 91 years, male 567.7
18_1 88 years, male 563.6
117_1 61 years, male 559.4
349_1 83 years, male 557.5
162_1 79 years, female 555.6
414_1 84 years, female 553.8
142_1 61 years, female 553.5
335_1 73 years, female 551.6
406_1 79 years, male 550.1
264_1 73 years, female 549.2
480_1 63 years, male 544.6
324_1 76 years, male 544.0
251_1 78 years, male 542.6
354_1 81 years, female 541.9
318_1 68 years, male 532.9
468_1 89 years, male 532.5
286_1 68 years, female 530.6
506_1 65 years, male 530.0
291_1 76 years, male 525.5
517_1 88 years, male 524.3
415_1 77 years, female 521.4
172_1 72 years, female 521.2
163_1 78 years, male 516.0
353_1 82 years, female 515.8
115_1 83 years, male 515.6
503_1 68 years, male 512.4
350_1 84 years, female 503.1
466_1 57 years, female 502.2
99_1 64 years, male 500.7
313_1 79 years, female 498.4
356_1 87 years, female 495.9
352_1 62 years, male 489.8
81_1 67 years, male 485.8
292_1 71 years, male 485.1
89_1 63 years, male 475.1
491_1 89 years, female 470.8
425_1 59 years, female 465.2
41_1 94 years, female 459.9
9_1 66 years, female 456.1
293_1 68 years, female 450.6
43_1 64 years, female 440.1
32_1 67 years, male 437.9
490_1 67 years, female 434.0
413_1 59 years, female 400.5
149_1 88 years, male 381.1
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

68.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 68.3
FF:10030-101E3 24-65 years, mixed 68.3

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