On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
37.1
nTPM
HPA Brain:
59.6
nTPM
GTEx:
37.1
nTPM
FANTOM5:
36.4
Scaled Tags Per Million
Macaque:
44.5
nTPM
Mouse:
27.7
nTPM
Rat:
23.3
nTPM
Pig:
36.8
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
ND
Sample
Intensity
Spinal cord_01
ND
Spinal cord_02
ND
Spinal cord_03
ND
Spinal cord_04
ND
Spinal cord_05
ND
Spinal cord_06
ND
Spinal cord_07
ND
Spinal cord_08
ND
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
59.6
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 50.4
2734
Male, age 80, both hemispheres
59.7
2818
Female, age 79, both hemispheres
51.9
2819
Male, age 47, both hemispheres
45.7
2193
Male, age 75, both hemispheres
44.3
Cervical spinal cord, central gray nTPM: 41.8
2565
Male, age 75, midline
45.9
2194
Female, age 79, both hemispheres
45.1
2816
Male, age 47, midline
43.4
2048
Male, age 55, midline
37.8
1981
Female, age 72, midline
36.4
Cervical spinal cord, dorsal horn nTPM: 36.9
2173
Female, age 72, unknown
47.5
1877
Male, age 55, unknown
37.3
2296
Male, age 66, both hemispheres
37.3
2069
Male, age 47, both hemispheres
35.7
2297
Male, age 75, both hemispheres
31.9
2721
Male, age 90, both hemispheres
31.6
Cervical spinal cord, ventral horn nTPM: 59.6
2809
Male, age 90, both hemispheres
74.5
2480
Male, age 75, both hemispheres
69.1
2295
Male, age 66, both hemispheres
62.8
2820
Female, age 79, both hemispheres
60.3
2068
Male, age 55, unknown
51.3
2098
Female, age 72, unknown
39.4
Dorsal funiculus (white matter) nTPM: 47.6
2064
Female, age 79, both hemispheres
51.1
2817
Male, age 47, both hemispheres
50.9
2810
Male, age 90, both hemispheres
48.7
2128
Male, age 75, both hemispheres
47.4
2812
Male, age 66, both hemispheres
40.1
Lateral funiculus (white matter) nTPM: 51.8
2294
Male, age 66, both hemispheres
55.5
2192
Male, age 75, both hemispheres
54.2
2094
Female, age 79, both hemispheres
52.0
2099
Male, age 90, both hemispheres
45.6
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
37.1
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 37.1
Samples: 204
Max nTPM: 82.1
Min nTPM: 15.6
Std nTPM: 11.8
Median nTPM: 35.3
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
82.1
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
78.5
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
73.9
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
72.5
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
65.3
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
64.0
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
62.2
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
61.6
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
58.8
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
58.6
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
58.4
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
56.7
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
56.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
55.5
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
55.2
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
55.2
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
54.0
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
54.0
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
53.7
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
53.1
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
51.7
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
51.5
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
51.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
50.3
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
50.1
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
50.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
50.0
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
49.9
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
49.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
49.6
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
49.5
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
49.5
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
48.4
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
48.4
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
48.2
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
48.2
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
48.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
46.5
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
45.4
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
45.4
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
45.3
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
45.1
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
45.0
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
45.0
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
44.8
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
44.8
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
44.3
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
44.2
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
44.2
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
44.0
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
43.7
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
43.5
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
43.3
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
43.0
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
42.6
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
42.4
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
42.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
42.3
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
42.2
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
42.2
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
42.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
41.5
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
41.3
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
41.2
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
41.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
41.0
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
40.8
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
40.7
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
40.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
40.5
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
40.5
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
40.4
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
40.4
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
40.2
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
39.8
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
39.7
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
39.6
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
39.4
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
39.3
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
39.1
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
38.9
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
38.7
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
38.7
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
38.5
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
37.6
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
37.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
37.1
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
37.1
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
36.9
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
36.8
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
36.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
36.8
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
36.6
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
36.3
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
36.2
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
35.8
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
35.8
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
35.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
35.6
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
35.6
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
35.5
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
35.4
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
35.2
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
34.9
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
34.9
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
34.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
34.6
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
34.6
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
34.5
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
34.4
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
34.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
34.2
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
34.1
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
33.9
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
33.7
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
33.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
33.7
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
33.5
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
33.5
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
33.5
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
33.4
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
33.2
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
33.1
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
33.0
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
33.0
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
32.8
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
32.7
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
32.6
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
32.6
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
32.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
32.1
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
31.9
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
31.6
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
31.5
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
31.2
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
31.2
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
31.2
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
31.1
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
31.1
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
31.0
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
30.7
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
30.6
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
30.4
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
30.1
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
30.1
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
29.8
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
29.6
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
29.5
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
29.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
29.2
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
29.1
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
29.1
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
29.1
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
29.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
28.9
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
28.8
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
28.8
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
28.8
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
28.8
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
28.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
28.7
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
28.2
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
28.1
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
27.2
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
27.0
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
26.6
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
26.5
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
26.2
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
26.1
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
26.0
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
26.0
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
25.8
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
25.6
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
25.5
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
25.4
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
24.7
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
24.5
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
24.3
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
24.1
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
24.0
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
23.8
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
23.7
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
23.6
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
23.2
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
22.7
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
22.5
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
22.3
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
22.0
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
21.9
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
21.8
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
21.7
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
21.6
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
20.2
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
20.1
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
19.4
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
19.3
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
18.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
18.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
18.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
16.9
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
16.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
16.0
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
15.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
15.6
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
44.5
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 27.9
Samples: 2
Max nTPM: 44.9
Min nTPM: 10.8
Sample A
10.8
Sample B
44.9
Ventral spinal cord nTPM: 44.5
Samples: 1
Max nTPM: 44.5
Min nTPM: 44.5
Sample A
44.5
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
36.8
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 28.7
Samples: 4
Max nTPM: 37.3
Min nTPM: 23.9
Sample A
Female
26.8
Sample B
Female
26.7
Sample C
Male
23.9
Sample D
Male
37.3
Ventral spinal cord nTPM: 36.8
Samples: 4
Max nTPM: 53.6
Min nTPM: 29.7
Sample A
Female
32.0
Sample B
Female
31.9
Sample C
Male
29.7
Sample D
Male
53.6
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
27.7
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 27.7
Samples: 4
Max nTPM: 29.5
Min nTPM: 25.7
Sample A
25.7
Sample B
29.5
Sample C
27.5
Sample D
28.0
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
23.3
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 23.3
Samples: 4
Max nTPM: 27.5
Min nTPM: 19.6
Sample A
22.1
Sample A
27.5
Sample A
23.8
Sample A
19.6
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The Human Protein Atlas project is funded
