A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.6
nTPM
Monaco:
114.9
nTPM
Schmiedel:
77.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.6
HPA sample
nTPM
Memory B-cell nTPM: 9.9
Samples: 6
Max nTPM: 13.0
Min nTPM: 2.7
P10809_1017
12.1
P10809_1025
11.3
P10809_1044
2.7
P10809_1063
13.0
P10809_1092
8.8
P10809_1105
11.8
Naive B-cell nTPM: 10.6
Samples: 6
Max nTPM: 14.8
Min nTPM: 5.6
P10809_1011
14.8
P10809_1029
5.6
P10809_1048
8.0
P10809_1067
10.7
P10809_1091
10.6
P10809_1104
13.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
114.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 89.9
Samples: 4
Max nTPM: 98.1
Min nTPM: 83.1
RHH5310_R3677
83.1
RHH5218_R3590
90.5
RHH5247_R3619
87.7
RHH5276_R3648
98.1
Naive B-cell nTPM: 64.2
Samples: 4
Max nTPM: 67.9
Min nTPM: 61.6
RHH5308_R3675
67.9
RHH5216_R3588
61.6
RHH5245_R3617
62.6
RHH5274_R3646
64.7
Non-switched memory B-cell nTPM: 50.3
Samples: 4
Max nTPM: 57.7
Min nTPM: 42.0
RHH5309_R3676
55.3
RHH5217_R3589
57.7
RHH5246_R3618
42.0
RHH5275_R3647
46.1
Plasmablast nTPM: 114.9
Samples: 4
Max nTPM: 128.9
Min nTPM: 95.6
RHH5312_R3679
128.9
RHH5220_R3592
128.7
RHH5249_R3621
95.6
RHH5278_R3650
106.3
Switched memory B-cell nTPM: 91.6
Samples: 4
Max nTPM: 103.0
Min nTPM: 81.1
RHH5311_R3678
81.1
RHH5219_R3591
97.8
RHH5248_R3620
103.0
RHH5277_R3649
84.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
77.7
Schmiedel sample id
TPM
Naive B-cell TPM: 77.7
Samples: 91
Max TPM: 156.0
Min TPM: 40.1
B_CELL_NAIVE_1
156.0
B_CELL_NAIVE_2
144.7
B_CELL_NAIVE_3
125.2
B_CELL_NAIVE_4
121.0
B_CELL_NAIVE_5
120.5
B_CELL_NAIVE_6
118.9
B_CELL_NAIVE_7
118.8
B_CELL_NAIVE_8
111.5
B_CELL_NAIVE_9
110.0
B_CELL_NAIVE_10
108.7
B_CELL_NAIVE_11
108.7
B_CELL_NAIVE_12
108.3
B_CELL_NAIVE_13
107.3
B_CELL_NAIVE_14
104.3
B_CELL_NAIVE_15
104.1
B_CELL_NAIVE_16
103.8
B_CELL_NAIVE_17
103.4
B_CELL_NAIVE_18
103.2
B_CELL_NAIVE_19
101.2
B_CELL_NAIVE_20
99.6
B_CELL_NAIVE_21
99.4
B_CELL_NAIVE_22
98.0
B_CELL_NAIVE_23
96.0
B_CELL_NAIVE_24
94.0
B_CELL_NAIVE_25
93.5
B_CELL_NAIVE_26
93.3
B_CELL_NAIVE_27
92.3
B_CELL_NAIVE_28
88.2
B_CELL_NAIVE_29
88.1
B_CELL_NAIVE_30
86.9
B_CELL_NAIVE_31
86.4
B_CELL_NAIVE_32
86.1
B_CELL_NAIVE_33
84.6
B_CELL_NAIVE_34
83.8
B_CELL_NAIVE_35
83.1
B_CELL_NAIVE_36
82.2
B_CELL_NAIVE_37
80.5
B_CELL_NAIVE_38
80.2
B_CELL_NAIVE_39
79.6
B_CELL_NAIVE_40
79.0
B_CELL_NAIVE_41
78.8
B_CELL_NAIVE_42
78.3
B_CELL_NAIVE_43
77.0
B_CELL_NAIVE_44
76.6
B_CELL_NAIVE_45
76.6
B_CELL_NAIVE_46
74.3
B_CELL_NAIVE_47
74.2
B_CELL_NAIVE_48
74.1
B_CELL_NAIVE_49
73.6
B_CELL_NAIVE_50
72.5
B_CELL_NAIVE_51
72.4
B_CELL_NAIVE_52
72.0
B_CELL_NAIVE_53
70.8
B_CELL_NAIVE_54
69.5
B_CELL_NAIVE_55
68.9
B_CELL_NAIVE_56
68.1
B_CELL_NAIVE_57
66.5
B_CELL_NAIVE_58
65.9
B_CELL_NAIVE_59
65.6
B_CELL_NAIVE_60
64.2
B_CELL_NAIVE_61
63.6
B_CELL_NAIVE_62
63.4
B_CELL_NAIVE_63
63.0
B_CELL_NAIVE_64
61.6
B_CELL_NAIVE_65
60.5
B_CELL_NAIVE_66
60.4
B_CELL_NAIVE_67
59.5
B_CELL_NAIVE_68
56.6
B_CELL_NAIVE_69
56.3
B_CELL_NAIVE_70
55.3
B_CELL_NAIVE_71
54.5
B_CELL_NAIVE_72
53.8
B_CELL_NAIVE_73
52.4
B_CELL_NAIVE_74
51.7
B_CELL_NAIVE_75
51.7
B_CELL_NAIVE_76
50.1
B_CELL_NAIVE_77
50.0
B_CELL_NAIVE_78
49.3
B_CELL_NAIVE_79
49.1
B_CELL_NAIVE_80
48.6
B_CELL_NAIVE_81
48.2
B_CELL_NAIVE_82
48.0
B_CELL_NAIVE_83
48.0
B_CELL_NAIVE_84
47.3
B_CELL_NAIVE_85
45.9
B_CELL_NAIVE_86
44.9
B_CELL_NAIVE_87
40.8
B_CELL_NAIVE_88
40.6
B_CELL_NAIVE_89
40.5
B_CELL_NAIVE_90
40.3
B_CELL_NAIVE_91
40.1
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The Human Protein Atlas project is funded
