A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.3
nTPM
Monaco:
17.1
nTPM
Schmiedel:
18.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.3
HPA sample
nTPM
Classical monocyte nTPM: 1.2
Samples: 6
Max nTPM: 1.8
Min nTPM: 1.0
P10809_1003
1.0
P10809_1020
1.1
P10809_1039
1.0
P10809_1058
1.0
P10809_1080
1.5
P10809_1107
1.8
Intermediate monocyte nTPM: 1.6
Samples: 6
Max nTPM: 3.3
Min nTPM: 0.0
P10809_1004
1.2
P10809_1023
0.5
P10809_1042
3.3
P10809_1061
0.0
P10809_1081
1.7
P10809_1108
2.6
Non-classical monocyte nTPM: 3.3
Samples: 5
Max nTPM: 6.0
Min nTPM: 1.2
P10809_1005
1.2
P10809_1053
2.3
P10809_1072
6.0
P10809_1082
4.1
P10809_1109
2.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.1
Monaco sample
nTPM
Classical monocyte nTPM: 8.1
Samples: 4
Max nTPM: 10.1
Min nTPM: 3.8
RHH5313_R3680
10.1
RHH5221_R3593
3.8
RHH5250_R3622
8.9
RHH5279_R3651
9.8
Intermediate monocyte nTPM: 17.1
Samples: 4
Max nTPM: 22.3
Min nTPM: 11.7
RHH5314_R3681
11.7
RHH5222_R3594
17.7
RHH5251_R3623
22.3
RHH5280_R3652
16.8
Non-classical monocyte nTPM: 14.9
Samples: 4
Max nTPM: 18.4
Min nTPM: 8.2
RHH5315_R3682
15.3
RHH5223_R3595
8.2
RHH5252_R3624
17.7
RHH5281_R3653
18.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.2
Schmiedel sample id
TPM
Classical monocyte TPM: 9.4
Samples: 91
Max TPM: 17.1
Min TPM: 3.8
MONOCYTES_1
17.1
MONOCYTES_2
15.1
MONOCYTES_3
14.7
MONOCYTES_4
14.6
MONOCYTES_5
14.4
MONOCYTES_6
14.3
MONOCYTES_7
14.3
MONOCYTES_8
14.1
MONOCYTES_9
14.0
MONOCYTES_10
13.3
MONOCYTES_11
13.0
MONOCYTES_12
12.8
MONOCYTES_13
12.7
MONOCYTES_14
12.6
MONOCYTES_15
12.6
MONOCYTES_16
12.5
MONOCYTES_17
12.0
MONOCYTES_18
12.0
MONOCYTES_19
12.0
MONOCYTES_20
11.8
MONOCYTES_21
11.7
MONOCYTES_22
11.6
MONOCYTES_23
11.6
MONOCYTES_24
11.5
MONOCYTES_25
11.5
MONOCYTES_26
11.4
MONOCYTES_27
11.0
MONOCYTES_28
11.0
MONOCYTES_29
10.8
MONOCYTES_30
10.6
MONOCYTES_31
10.5
MONOCYTES_32
10.4
MONOCYTES_33
10.2
MONOCYTES_34
10.0
MONOCYTES_35
9.9
MONOCYTES_36
9.8
MONOCYTES_37
9.7
MONOCYTES_38
9.7
MONOCYTES_39
9.7
MONOCYTES_40
9.6
MONOCYTES_41
9.6
MONOCYTES_42
9.6
MONOCYTES_43
9.5
MONOCYTES_44
9.4
MONOCYTES_45
9.2
MONOCYTES_46
9.2
MONOCYTES_47
9.0
MONOCYTES_48
9.0
MONOCYTES_49
8.9
MONOCYTES_50
8.8
MONOCYTES_51
8.8
MONOCYTES_52
8.7
MONOCYTES_53
8.5
MONOCYTES_54
8.5
MONOCYTES_55
8.4
MONOCYTES_56
8.4
MONOCYTES_57
8.4
MONOCYTES_58
8.2
MONOCYTES_59
8.2
MONOCYTES_60
8.0
MONOCYTES_61
7.9
MONOCYTES_62
7.8
MONOCYTES_63
7.8
MONOCYTES_64
7.8
MONOCYTES_65
7.8
MONOCYTES_66
7.7
MONOCYTES_67
7.6
MONOCYTES_68
7.5
MONOCYTES_69
7.4
MONOCYTES_70
6.9
MONOCYTES_71
6.8
MONOCYTES_72
6.8
MONOCYTES_73
6.8
MONOCYTES_74
6.7
MONOCYTES_75
6.6
MONOCYTES_76
6.2
MONOCYTES_77
6.2
MONOCYTES_78
6.0
MONOCYTES_79
5.9
MONOCYTES_80
5.8
MONOCYTES_81
5.8
MONOCYTES_82
5.8
MONOCYTES_83
5.5
MONOCYTES_84
5.3
MONOCYTES_85
5.1
MONOCYTES_86
5.0
MONOCYTES_87
4.9
MONOCYTES_88
4.8
MONOCYTES_89
4.7
MONOCYTES_90
4.6
MONOCYTES_91
3.8
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Non-classical monocyte TPM: 18.2
Samples: 90
Max TPM: 44.8
Min TPM: 7.2
M2_1
44.8
M2_2
36.5
M2_3
35.2
M2_4
32.7
M2_5
31.9
M2_6
29.5
M2_7
28.1
M2_8
26.8
M2_9
26.8
M2_10
26.7
M2_11
26.5
M2_12
26.3
M2_13
25.4
M2_14
25.3
M2_15
24.8
M2_16
24.0
M2_17
23.4
M2_18
23.4
M2_19
22.8
M2_20
22.7
M2_21
22.2
M2_22
22.0
M2_23
21.6
M2_24
21.5
M2_25
20.9
M2_26
20.9
M2_27
20.8
M2_28
20.8
M2_29
20.5
M2_30
20.2
M2_31
20.2
M2_32
19.7
M2_33
19.7
M2_34
19.5
M2_35
19.3
M2_36
19.3
M2_37
18.8
M2_38
18.6
M2_39
18.3
M2_40
18.2
M2_41
18.2
M2_42
18.2
M2_43
18.1
M2_44
17.4
M2_45
17.3
M2_46
17.0
M2_47
16.9
M2_48
16.9
M2_49
16.7
M2_50
16.4
M2_51
16.1
M2_52
16.0
M2_53
15.7
M2_54
15.6
M2_55
15.4
M2_56
15.3
M2_57
15.1
M2_58
15.0
M2_59
14.8
M2_60
14.5
M2_61
14.4
M2_62
14.3
M2_63
14.2
M2_64
14.0
M2_65
13.8
M2_66
13.1
M2_67
12.6
M2_68
12.5
M2_69
12.5
M2_70
12.3
M2_71
12.3
M2_72
12.1
M2_73
12.0
M2_74
11.9
M2_75
11.6
M2_76
11.2
M2_77
11.1
M2_78
10.9
M2_79
10.9
M2_80
10.8
M2_81
10.8
M2_82
10.7
M2_83
10.3
M2_84
10.2
M2_85
10.1
M2_86
8.7
M2_87
8.6
M2_88
8.2
M2_89
7.6
M2_90
7.2
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