A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.2
nTPM
Monaco:
145.4
nTPM
Schmiedel:
153.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.2
HPA sample
nTPM
Memory B-cell nTPM: 9.6
Samples: 6
Max nTPM: 15.3
Min nTPM: 6.9
P10809_1017
15.3
P10809_1025
9.1
P10809_1044
6.9
P10809_1063
7.8
P10809_1092
7.9
P10809_1105
10.9
Naive B-cell nTPM: 12.2
Samples: 6
Max nTPM: 19.6
Min nTPM: 4.0
P10809_1011
13.0
P10809_1029
9.5
P10809_1048
4.0
P10809_1067
11.4
P10809_1091
15.9
P10809_1104
19.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
145.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 115.4
Samples: 4
Max nTPM: 152.9
Min nTPM: 72.7
RHH5310_R3677
152.9
RHH5218_R3590
72.7
RHH5247_R3619
143.5
RHH5276_R3648
92.3
Naive B-cell nTPM: 145.4
Samples: 4
Max nTPM: 230.0
Min nTPM: 97.5
RHH5308_R3675
107.8
RHH5216_R3588
146.4
RHH5245_R3617
230.0
RHH5274_R3646
97.5
Non-switched memory B-cell nTPM: 64.6
Samples: 4
Max nTPM: 102.4
Min nTPM: 45.2
RHH5309_R3676
61.2
RHH5217_R3589
49.5
RHH5246_R3618
102.4
RHH5275_R3647
45.2
Plasmablast nTPM: 120.3
Samples: 4
Max nTPM: 159.9
Min nTPM: 91.8
RHH5312_R3679
91.8
RHH5220_R3592
128.7
RHH5249_R3621
159.9
RHH5278_R3650
100.8
Switched memory B-cell nTPM: 108.0
Samples: 4
Max nTPM: 149.8
Min nTPM: 66.7
RHH5311_R3678
149.8
RHH5219_R3591
81.9
RHH5248_R3620
133.6
RHH5277_R3649
66.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
153.8
Schmiedel sample id
TPM
Naive B-cell TPM: 153.8
Samples: 91
Max TPM: 234.6
Min TPM: 75.3
B_CELL_NAIVE_1
234.6
B_CELL_NAIVE_2
226.1
B_CELL_NAIVE_3
225.3
B_CELL_NAIVE_4
222.8
B_CELL_NAIVE_5
219.9
B_CELL_NAIVE_6
214.6
B_CELL_NAIVE_7
203.2
B_CELL_NAIVE_8
203.0
B_CELL_NAIVE_9
200.8
B_CELL_NAIVE_10
198.9
B_CELL_NAIVE_11
197.1
B_CELL_NAIVE_12
196.3
B_CELL_NAIVE_13
188.0
B_CELL_NAIVE_14
186.9
B_CELL_NAIVE_15
184.4
B_CELL_NAIVE_16
183.0
B_CELL_NAIVE_17
182.7
B_CELL_NAIVE_18
177.4
B_CELL_NAIVE_19
175.2
B_CELL_NAIVE_20
174.8
B_CELL_NAIVE_21
174.4
B_CELL_NAIVE_22
173.8
B_CELL_NAIVE_23
173.5
B_CELL_NAIVE_24
173.5
B_CELL_NAIVE_25
173.2
B_CELL_NAIVE_26
171.6
B_CELL_NAIVE_27
171.1
B_CELL_NAIVE_28
169.9
B_CELL_NAIVE_29
169.5
B_CELL_NAIVE_30
169.1
B_CELL_NAIVE_31
167.7
B_CELL_NAIVE_32
166.4
B_CELL_NAIVE_33
166.0
B_CELL_NAIVE_34
165.5
B_CELL_NAIVE_35
165.5
B_CELL_NAIVE_36
163.1
B_CELL_NAIVE_37
162.9
B_CELL_NAIVE_38
162.4
B_CELL_NAIVE_39
161.1
B_CELL_NAIVE_40
161.1
B_CELL_NAIVE_41
160.9
B_CELL_NAIVE_42
160.8
B_CELL_NAIVE_43
155.9
B_CELL_NAIVE_44
154.8
B_CELL_NAIVE_45
153.6
B_CELL_NAIVE_46
153.5
B_CELL_NAIVE_47
153.4
B_CELL_NAIVE_48
152.3
B_CELL_NAIVE_49
151.4
B_CELL_NAIVE_50
151.2
B_CELL_NAIVE_51
150.5
B_CELL_NAIVE_52
148.0
B_CELL_NAIVE_53
147.5
B_CELL_NAIVE_54
147.1
B_CELL_NAIVE_55
147.0
B_CELL_NAIVE_56
146.6
B_CELL_NAIVE_57
144.9
B_CELL_NAIVE_58
144.3
B_CELL_NAIVE_59
142.8
B_CELL_NAIVE_60
140.8
B_CELL_NAIVE_61
139.9
B_CELL_NAIVE_62
139.0
B_CELL_NAIVE_63
139.0
B_CELL_NAIVE_64
138.9
B_CELL_NAIVE_65
138.5
B_CELL_NAIVE_66
135.2
B_CELL_NAIVE_67
134.9
B_CELL_NAIVE_68
133.5
B_CELL_NAIVE_69
133.1
B_CELL_NAIVE_70
131.6
B_CELL_NAIVE_71
130.3
B_CELL_NAIVE_72
129.5
B_CELL_NAIVE_73
128.9
B_CELL_NAIVE_74
127.6
B_CELL_NAIVE_75
126.5
B_CELL_NAIVE_76
125.7
B_CELL_NAIVE_77
117.4
B_CELL_NAIVE_78
116.4
B_CELL_NAIVE_79
112.9
B_CELL_NAIVE_80
111.6
B_CELL_NAIVE_81
110.1
B_CELL_NAIVE_82
109.1
B_CELL_NAIVE_83
108.2
B_CELL_NAIVE_84
107.9
B_CELL_NAIVE_85
106.8
B_CELL_NAIVE_86
96.5
B_CELL_NAIVE_87
88.3
B_CELL_NAIVE_88
84.1
B_CELL_NAIVE_89
81.1
B_CELL_NAIVE_90
77.9
B_CELL_NAIVE_91
75.3
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