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BETA
  • SUMMARY

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  • BRAIN

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  • TRIB2
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:12.2 nTPM
Monaco:145.4 nTPM
Schmiedel:153.8 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

12.2
HPA sample nTPM
Memory B-cell
nTPM: 9.6
Samples: 6

Max nTPM: 15.3
Min nTPM: 6.9
P10809_1017 15.3
P10809_1025 9.1
P10809_1044 6.9
P10809_1063 7.8
P10809_1092 7.9
P10809_1105 10.9
Naive B-cell
nTPM: 12.2
Samples: 6

Max nTPM: 19.6
Min nTPM: 4.0
P10809_1011 13.0
P10809_1029 9.5
P10809_1048 4.0
P10809_1067 11.4
P10809_1091 15.9
P10809_1104 19.6

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

145.4
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 115.4
Samples: 4

Max nTPM: 152.9
Min nTPM: 72.7
RHH5310_R3677 152.9
RHH5218_R3590 72.7
RHH5247_R3619 143.5
RHH5276_R3648 92.3
Naive B-cell
nTPM: 145.4
Samples: 4

Max nTPM: 230.0
Min nTPM: 97.5
RHH5308_R3675 107.8
RHH5216_R3588 146.4
RHH5245_R3617 230.0
RHH5274_R3646 97.5
Non-switched memory B-cell
nTPM: 64.6
Samples: 4

Max nTPM: 102.4
Min nTPM: 45.2
RHH5309_R3676 61.2
RHH5217_R3589 49.5
RHH5246_R3618 102.4
RHH5275_R3647 45.2
Plasmablast
nTPM: 120.3
Samples: 4

Max nTPM: 159.9
Min nTPM: 91.8
RHH5312_R3679 91.8
RHH5220_R3592 128.7
RHH5249_R3621 159.9
RHH5278_R3650 100.8
Switched memory B-cell
nTPM: 108.0
Samples: 4

Max nTPM: 149.8
Min nTPM: 66.7
RHH5311_R3678 149.8
RHH5219_R3591 81.9
RHH5248_R3620 133.6
RHH5277_R3649 66.7

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

153.8
Schmiedel sample id TPM
Naive B-cell
TPM: 153.8
Samples: 91

Max TPM: 234.6
Min TPM: 75.3
B_CELL_NAIVE_1 234.6
B_CELL_NAIVE_2 226.1
B_CELL_NAIVE_3 225.3
B_CELL_NAIVE_4 222.8
B_CELL_NAIVE_5 219.9
B_CELL_NAIVE_6 214.6
B_CELL_NAIVE_7 203.2
B_CELL_NAIVE_8 203.0
B_CELL_NAIVE_9 200.8
B_CELL_NAIVE_10 198.9
B_CELL_NAIVE_11 197.1
B_CELL_NAIVE_12 196.3
B_CELL_NAIVE_13 188.0
B_CELL_NAIVE_14 186.9
B_CELL_NAIVE_15 184.4
B_CELL_NAIVE_16 183.0
B_CELL_NAIVE_17 182.7
B_CELL_NAIVE_18 177.4
B_CELL_NAIVE_19 175.2
B_CELL_NAIVE_20 174.8
B_CELL_NAIVE_21 174.4
B_CELL_NAIVE_22 173.8
B_CELL_NAIVE_23 173.5
B_CELL_NAIVE_24 173.5
B_CELL_NAIVE_25 173.2
B_CELL_NAIVE_26 171.6
B_CELL_NAIVE_27 171.1
B_CELL_NAIVE_28 169.9
B_CELL_NAIVE_29 169.5
B_CELL_NAIVE_30 169.1
B_CELL_NAIVE_31 167.7
B_CELL_NAIVE_32 166.4
B_CELL_NAIVE_33 166.0
B_CELL_NAIVE_34 165.5
B_CELL_NAIVE_35 165.5
B_CELL_NAIVE_36 163.1
B_CELL_NAIVE_37 162.9
B_CELL_NAIVE_38 162.4
B_CELL_NAIVE_39 161.1
B_CELL_NAIVE_40 161.1
B_CELL_NAIVE_41 160.9
B_CELL_NAIVE_42 160.8
B_CELL_NAIVE_43 155.9
B_CELL_NAIVE_44 154.8
B_CELL_NAIVE_45 153.6
B_CELL_NAIVE_46 153.5
B_CELL_NAIVE_47 153.4
B_CELL_NAIVE_48 152.3
B_CELL_NAIVE_49 151.4
B_CELL_NAIVE_50 151.2
B_CELL_NAIVE_51 150.5
B_CELL_NAIVE_52 148.0
B_CELL_NAIVE_53 147.5
B_CELL_NAIVE_54 147.1
B_CELL_NAIVE_55 147.0
B_CELL_NAIVE_56 146.6
B_CELL_NAIVE_57 144.9
B_CELL_NAIVE_58 144.3
B_CELL_NAIVE_59 142.8
B_CELL_NAIVE_60 140.8
B_CELL_NAIVE_61 139.9
B_CELL_NAIVE_62 139.0
B_CELL_NAIVE_63 139.0
B_CELL_NAIVE_64 138.9
B_CELL_NAIVE_65 138.5
B_CELL_NAIVE_66 135.2
B_CELL_NAIVE_67 134.9
B_CELL_NAIVE_68 133.5
B_CELL_NAIVE_69 133.1
B_CELL_NAIVE_70 131.6
B_CELL_NAIVE_71 130.3
B_CELL_NAIVE_72 129.5
B_CELL_NAIVE_73 128.9
B_CELL_NAIVE_74 127.6
B_CELL_NAIVE_75 126.5
B_CELL_NAIVE_76 125.7
B_CELL_NAIVE_77 117.4
B_CELL_NAIVE_78 116.4
B_CELL_NAIVE_79 112.9
B_CELL_NAIVE_80 111.6
B_CELL_NAIVE_81 110.1
B_CELL_NAIVE_82 109.1
B_CELL_NAIVE_83 108.2
B_CELL_NAIVE_84 107.9
B_CELL_NAIVE_85 106.8
B_CELL_NAIVE_86 96.5
B_CELL_NAIVE_87 88.3
B_CELL_NAIVE_88 84.1
B_CELL_NAIVE_89 81.1
B_CELL_NAIVE_90 77.9
B_CELL_NAIVE_91 75.3
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