A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
19.3
nTPM
Monaco:
115.6
nTPM
Schmiedel:
122.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.3
HPA sample
nTPM
NK-cell nTPM: 19.3
Samples: 6
Max nTPM: 24.7
Min nTPM: 9.7
P10809_1013
22.0
P10809_1033
16.1
P10809_1052
22.5
P10809_1071
24.7
P10809_1093
9.7
P10809_1103
20.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
115.6
Monaco sample
nTPM
NK-cell nTPM: 115.6
Samples: 4
Max nTPM: 151.6
Min nTPM: 83.3
RHH5316_R3683
142.6
RHH5224_R3596
151.6
RHH5253_R3625
83.3
RHH5282_R3654
84.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
122.3
Schmiedel sample id
TPM
NK-cell TPM: 122.3
Samples: 90
Max TPM: 193.7
Min TPM: 60.9
NK_1
193.7
NK_2
170.8
NK_3
169.2
NK_4
167.7
NK_5
164.9
NK_6
160.5
NK_7
159.8
NK_8
159.8
NK_9
157.6
NK_10
157.0
NK_11
155.4
NK_12
154.1
NK_13
151.6
NK_14
151.2
NK_15
148.5
NK_16
146.9
NK_17
146.8
NK_18
144.3
NK_19
143.7
NK_20
143.5
NK_21
139.7
NK_22
139.6
NK_23
138.7
NK_24
137.4
NK_25
137.3
NK_26
137.1
NK_27
136.0
NK_28
134.1
NK_29
133.7
NK_30
133.6
NK_31
131.9
NK_32
131.4
NK_33
130.9
NK_34
130.2
NK_35
129.8
NK_36
128.9
NK_37
128.7
NK_38
127.9
NK_39
127.4
NK_40
126.6
NK_41
125.4
NK_42
124.1
NK_43
123.3
NK_44
121.5
NK_45
120.8
NK_46
120.8
NK_47
120.2
NK_48
119.7
NK_49
118.9
NK_50
118.8
NK_51
116.5
NK_52
116.3
NK_53
116.2
NK_54
115.7
NK_55
115.3
NK_56
114.2
NK_57
113.7
NK_58
113.5
NK_59
113.3
NK_60
112.3
NK_61
111.8
NK_62
111.8
NK_63
111.3
NK_64
107.9
NK_65
107.0
NK_66
106.8
NK_67
106.1
NK_68
104.3
NK_69
104.1
NK_70
104.1
NK_71
102.9
NK_72
100.9
NK_73
100.3
NK_74
100.2
NK_75
99.2
NK_76
98.9
NK_77
98.6
NK_78
97.1
NK_79
95.5
NK_80
93.0
NK_81
90.7
NK_82
88.2
NK_83
83.8
NK_84
82.0
NK_85
77.0
NK_86
74.9
NK_87
74.9
NK_88
72.7
NK_89
69.1
NK_90
60.9
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