A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.0
nTPM
Monaco:
6.1
nTPM
Schmiedel:
48.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.0
HPA sample
nTPM
NK-cell nTPM: 3.0
Samples: 6
Max nTPM: 4.7
Min nTPM: 1.5
P10809_1013
1.5
P10809_1033
2.0
P10809_1052
4.4
P10809_1071
2.7
P10809_1093
4.7
P10809_1103
2.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.1
Monaco sample
nTPM
NK-cell nTPM: 6.1
Samples: 4
Max nTPM: 7.9
Min nTPM: 3.3
RHH5316_R3683
5.8
RHH5224_R3596
7.3
RHH5253_R3625
7.9
RHH5282_R3654
3.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.2
Schmiedel sample id
TPM
NK-cell TPM: 48.2
Samples: 90
Max TPM: 70.0
Min TPM: 26.1
NK_1
70.0
NK_2
69.9
NK_3
69.2
NK_4
68.8
NK_5
67.6
NK_6
67.1
NK_7
65.7
NK_8
65.3
NK_9
63.5
NK_10
63.4
NK_11
63.1
NK_12
61.7
NK_13
61.3
NK_14
60.0
NK_15
60.0
NK_16
59.7
NK_17
59.3
NK_18
59.3
NK_19
58.7
NK_20
58.3
NK_21
58.0
NK_22
56.6
NK_23
56.2
NK_24
55.7
NK_25
55.5
NK_26
55.4
NK_27
54.1
NK_28
53.8
NK_29
53.2
NK_30
52.7
NK_31
52.6
NK_32
52.6
NK_33
52.5
NK_34
52.3
NK_35
52.1
NK_36
51.2
NK_37
51.2
NK_38
50.2
NK_39
49.7
NK_40
49.6
NK_41
48.9
NK_42
48.4
NK_43
48.4
NK_44
48.3
NK_45
48.1
NK_46
48.0
NK_47
47.9
NK_48
46.7
NK_49
46.6
NK_50
45.9
NK_51
45.2
NK_52
45.1
NK_53
45.0
NK_54
44.5
NK_55
44.1
NK_56
43.1
NK_57
42.8
NK_58
42.2
NK_59
41.8
NK_60
41.8
NK_61
41.7
NK_62
41.6
NK_63
41.3
NK_64
41.2
NK_65
40.9
NK_66
40.8
NK_67
40.7
NK_68
40.0
NK_69
40.0
NK_70
39.7
NK_71
39.6
NK_72
39.1
NK_73
38.9
NK_74
38.8
NK_75
38.3
NK_76
37.5
NK_77
36.4
NK_78
35.4
NK_79
34.6
NK_80
34.1
NK_81
33.9
NK_82
33.4
NK_83
32.6
NK_84
32.4
NK_85
31.4
NK_86
30.6
NK_87
29.7
NK_88
28.4
NK_89
26.1
NK_90
26.1
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