A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.4
nTPM
Monaco:
7.6
nTPM
Schmiedel:
27.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.4
HPA sample
nTPM
Classical monocyte nTPM: 2.3
Samples: 6
Max nTPM: 3.4
Min nTPM: 1.5
P10809_1003
1.5
P10809_1020
1.7
P10809_1039
2.5
P10809_1058
2.3
P10809_1080
2.6
P10809_1107
3.4
Intermediate monocyte nTPM: 3.4
Samples: 6
Max nTPM: 5.4
Min nTPM: 1.9
P10809_1004
3.9
P10809_1023
3.6
P10809_1042
2.8
P10809_1061
1.9
P10809_1081
2.6
P10809_1108
5.4
Non-classical monocyte nTPM: 2.4
Samples: 5
Max nTPM: 3.6
Min nTPM: 0.9
P10809_1005
2.1
P10809_1053
2.8
P10809_1072
0.9
P10809_1082
2.8
P10809_1109
3.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.6
Monaco sample
nTPM
Classical monocyte nTPM: 4.6
Samples: 4
Max nTPM: 5.7
Min nTPM: 3.9
RHH5313_R3680
4.2
RHH5221_R3593
3.9
RHH5250_R3622
5.7
RHH5279_R3651
4.7
Intermediate monocyte nTPM: 7.7
Samples: 4
Max nTPM: 10.2
Min nTPM: 4.0
RHH5314_R3681
10.2
RHH5222_R3594
7.3
RHH5251_R3623
9.1
RHH5280_R3652
4.0
Non-classical monocyte nTPM: 5.4
Samples: 4
Max nTPM: 9.2
Min nTPM: 1.3
RHH5315_R3682
9.2
RHH5223_R3595
1.3
RHH5252_R3624
6.8
RHH5281_R3653
4.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.8
Schmiedel sample id
TPM
Classical monocyte TPM: 26.7
Samples: 91
Max TPM: 38.9
Min TPM: 16.1
MONOCYTES_1
38.9
MONOCYTES_2
36.7
MONOCYTES_3
35.1
MONOCYTES_4
34.7
MONOCYTES_5
34.1
MONOCYTES_6
33.6
MONOCYTES_7
33.3
MONOCYTES_8
33.3
MONOCYTES_9
33.1
MONOCYTES_10
33.0
MONOCYTES_11
32.7
MONOCYTES_12
32.6
MONOCYTES_13
32.5
MONOCYTES_14
32.5
MONOCYTES_15
32.4
MONOCYTES_16
32.1
MONOCYTES_17
31.8
MONOCYTES_18
31.7
MONOCYTES_19
31.7
MONOCYTES_20
31.3
MONOCYTES_21
30.7
MONOCYTES_22
30.5
MONOCYTES_23
30.3
MONOCYTES_24
30.1
MONOCYTES_25
30.0
MONOCYTES_26
29.8
MONOCYTES_27
29.4
MONOCYTES_28
29.3
MONOCYTES_29
29.3
MONOCYTES_30
29.2
MONOCYTES_31
29.1
MONOCYTES_32
29.0
MONOCYTES_33
28.7
MONOCYTES_34
28.7
MONOCYTES_35
28.6
MONOCYTES_36
28.2
MONOCYTES_37
28.1
MONOCYTES_38
27.9
MONOCYTES_39
27.0
MONOCYTES_40
26.9
MONOCYTES_41
26.8
MONOCYTES_42
26.7
MONOCYTES_43
26.6
MONOCYTES_44
26.5
MONOCYTES_45
26.5
MONOCYTES_46
26.4
MONOCYTES_47
26.3
MONOCYTES_48
26.2
MONOCYTES_49
26.1
MONOCYTES_50
26.1
MONOCYTES_51
26.0
MONOCYTES_52
26.0
MONOCYTES_53
26.0
MONOCYTES_54
25.7
MONOCYTES_55
25.7
MONOCYTES_56
25.6
MONOCYTES_57
25.5
MONOCYTES_58
25.3
MONOCYTES_59
25.1
MONOCYTES_60
25.0
MONOCYTES_61
25.0
MONOCYTES_62
25.0
MONOCYTES_63
24.7
MONOCYTES_64
24.6
MONOCYTES_65
24.4
MONOCYTES_66
24.4
MONOCYTES_67
24.1
MONOCYTES_68
24.1
MONOCYTES_69
23.7
MONOCYTES_70
23.1
MONOCYTES_71
23.1
MONOCYTES_72
22.9
MONOCYTES_73
22.4
MONOCYTES_74
22.3
MONOCYTES_75
21.8
MONOCYTES_76
21.7
MONOCYTES_77
21.3
MONOCYTES_78
20.9
MONOCYTES_79
20.7
MONOCYTES_80
20.7
MONOCYTES_81
20.5
MONOCYTES_82
19.4
MONOCYTES_83
19.4
MONOCYTES_84
18.9
MONOCYTES_85
18.7
MONOCYTES_86
18.7
MONOCYTES_87
18.6
MONOCYTES_88
18.2
MONOCYTES_89
17.6
MONOCYTES_90
17.3
MONOCYTES_91
16.1
Show allShow less
Non-classical monocyte TPM: 27.8
Samples: 90
Max TPM: 39.6
Min TPM: 15.4
M2_1
39.6
M2_2
39.5
M2_3
37.8
M2_4
37.7
M2_5
37.5
M2_6
37.1
M2_7
37.0
M2_8
37.0
M2_9
36.7
M2_10
36.5
M2_11
36.0
M2_12
36.0
M2_13
34.6
M2_14
34.2
M2_15
34.1
M2_16
33.9
M2_17
32.9
M2_18
32.4
M2_19
32.2
M2_20
31.9
M2_21
31.9
M2_22
31.1
M2_23
31.0
M2_24
31.0
M2_25
30.7
M2_26
30.6
M2_27
30.5
M2_28
30.4
M2_29
30.1
M2_30
30.1
M2_31
30.0
M2_32
29.7
M2_33
29.3
M2_34
29.1
M2_35
29.1
M2_36
29.0
M2_37
29.0
M2_38
28.9
M2_39
28.9
M2_40
28.7
M2_41
28.5
M2_42
28.5
M2_43
28.2
M2_44
28.1
M2_45
27.9
M2_46
27.7
M2_47
27.6
M2_48
27.6
M2_49
27.6
M2_50
27.4
M2_51
27.3
M2_52
27.2
M2_53
27.1
M2_54
27.0
M2_55
26.9
M2_56
26.9
M2_57
26.7
M2_58
26.5
M2_59
26.2
M2_60
26.0
M2_61
25.7
M2_62
25.4
M2_63
25.3
M2_64
24.7
M2_65
24.5
M2_66
23.6
M2_67
23.4
M2_68
23.3
M2_69
23.3
M2_70
23.2
M2_71
23.1
M2_72
22.6
M2_73
22.4
M2_74
21.9
M2_75
21.7
M2_76
21.6
M2_77
21.2
M2_78
20.9
M2_79
20.7
M2_80
20.5
M2_81
20.3
M2_82
20.2
M2_83
20.1
M2_84
19.8
M2_85
19.4
M2_86
19.3
M2_87
17.6
M2_88
17.3
M2_89
16.1
M2_90
15.4
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.