A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
41.9
nTPM
Monaco:
32.0
nTPM
Schmiedel:
76.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.9
HPA sample
nTPM
NK-cell nTPM: 41.9
Samples: 6
Max nTPM: 73.4
Min nTPM: 25.0
P10809_1013
25.0
P10809_1033
33.3
P10809_1052
59.2
P10809_1071
29.5
P10809_1093
73.4
P10809_1103
31.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.0
Monaco sample
nTPM
NK-cell nTPM: 32.0
Samples: 4
Max nTPM: 48.1
Min nTPM: 4.5
RHH5316_R3683
48.1
RHH5224_R3596
4.5
RHH5253_R3625
34.4
RHH5282_R3654
40.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
76.0
Schmiedel sample id
TPM
NK-cell TPM: 76.0
Samples: 90
Max TPM: 115.9
Min TPM: 27.0
NK_1
115.9
NK_2
114.1
NK_3
112.3
NK_4
107.9
NK_5
106.1
NK_6
105.9
NK_7
103.5
NK_8
103.2
NK_9
102.7
NK_10
101.9
NK_11
100.7
NK_12
100.6
NK_13
100.6
NK_14
99.9
NK_15
99.7
NK_16
99.5
NK_17
97.0
NK_18
95.8
NK_19
94.6
NK_20
94.4
NK_21
93.2
NK_22
92.9
NK_23
92.5
NK_24
92.3
NK_25
92.2
NK_26
91.2
NK_27
89.9
NK_28
88.5
NK_29
87.1
NK_30
86.3
NK_31
84.9
NK_32
84.8
NK_33
84.0
NK_34
83.5
NK_35
82.7
NK_36
82.7
NK_37
82.2
NK_38
81.9
NK_39
81.9
NK_40
81.8
NK_41
81.7
NK_42
81.3
NK_43
80.9
NK_44
79.4
NK_45
77.8
NK_46
77.4
NK_47
77.1
NK_48
76.8
NK_49
76.2
NK_50
75.8
NK_51
74.7
NK_52
74.0
NK_53
73.5
NK_54
73.0
NK_55
72.6
NK_56
71.1
NK_57
66.7
NK_58
65.3
NK_59
65.3
NK_60
65.1
NK_61
64.6
NK_62
64.5
NK_63
64.4
NK_64
63.8
NK_65
63.8
NK_66
62.9
NK_67
62.4
NK_68
60.2
NK_69
59.7
NK_70
59.5
NK_71
56.3
NK_72
56.3
NK_73
55.7
NK_74
54.9
NK_75
53.6
NK_76
52.8
NK_77
52.7
NK_78
51.8
NK_79
50.6
NK_80
49.8
NK_81
49.2
NK_82
49.1
NK_83
45.6
NK_84
44.3
NK_85
42.6
NK_86
41.1
NK_87
36.5
NK_88
35.7
NK_89
27.3
NK_90
27.0
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