A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
18.8
nTPM
Monaco:
60.9
nTPM
Schmiedel:
53.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.8
HPA sample
nTPM
NK-cell nTPM: 18.8
Samples: 6
Max nTPM: 29.6
Min nTPM: 11.1
P10809_1013
20.8
P10809_1033
22.3
P10809_1052
12.4
P10809_1071
16.9
P10809_1093
29.6
P10809_1103
11.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
60.9
Monaco sample
nTPM
NK-cell nTPM: 60.9
Samples: 4
Max nTPM: 76.0
Min nTPM: 34.4
RHH5316_R3683
67.1
RHH5224_R3596
34.4
RHH5253_R3625
66.1
RHH5282_R3654
76.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
53.5
Schmiedel sample id
TPM
NK-cell TPM: 53.5
Samples: 90
Max TPM: 80.7
Min TPM: 37.7
NK_1
80.7
NK_2
71.4
NK_3
71.3
NK_4
70.6
NK_5
66.9
NK_6
66.8
NK_7
66.5
NK_8
66.1
NK_9
64.4
NK_10
64.2
NK_11
62.4
NK_12
62.2
NK_13
61.7
NK_14
61.3
NK_15
60.9
NK_16
60.9
NK_17
60.7
NK_18
60.4
NK_19
60.3
NK_20
60.3
NK_21
60.0
NK_22
59.6
NK_23
59.3
NK_24
59.3
NK_25
59.2
NK_26
58.1
NK_27
57.9
NK_28
57.4
NK_29
57.3
NK_30
56.9
NK_31
56.0
NK_32
55.8
NK_33
55.8
NK_34
55.1
NK_35
54.8
NK_36
54.6
NK_37
54.4
NK_38
54.4
NK_39
54.2
NK_40
53.9
NK_41
53.7
NK_42
53.6
NK_43
53.4
NK_44
52.8
NK_45
52.6
NK_46
52.1
NK_47
52.1
NK_48
52.1
NK_49
51.8
NK_50
51.8
NK_51
51.8
NK_52
51.8
NK_53
50.9
NK_54
50.9
NK_55
50.3
NK_56
50.3
NK_57
49.9
NK_58
49.7
NK_59
49.3
NK_60
48.9
NK_61
48.9
NK_62
48.8
NK_63
48.8
NK_64
48.7
NK_65
47.7
NK_66
47.4
NK_67
47.3
NK_68
47.1
NK_69
46.8
NK_70
46.7
NK_71
46.7
NK_72
46.6
NK_73
46.5
NK_74
46.3
NK_75
46.3
NK_76
45.9
NK_77
45.9
NK_78
45.7
NK_79
45.4
NK_80
45.3
NK_81
44.1
NK_82
43.8
NK_83
42.5
NK_84
42.5
NK_85
41.2
NK_86
40.5
NK_87
39.7
NK_88
39.0
NK_89
38.6
NK_90
37.7
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