A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.3
nTPM
Monaco:
51.6
nTPM
Schmiedel:
31.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.3
HPA sample
nTPM
Classical monocyte nTPM: 12.4
Samples: 6
Max nTPM: 15.9
Min nTPM: 9.5
P10809_1003
12.4
P10809_1020
15.9
P10809_1039
12.9
P10809_1058
10.6
P10809_1080
9.5
P10809_1107
13.1
Intermediate monocyte nTPM: 12.0
Samples: 6
Max nTPM: 13.1
Min nTPM: 10.6
P10809_1004
13.1
P10809_1023
11.3
P10809_1042
11.5
P10809_1061
12.6
P10809_1081
10.6
P10809_1108
13.0
Non-classical monocyte nTPM: 15.3
Samples: 5
Max nTPM: 22.2
Min nTPM: 10.0
P10809_1005
12.9
P10809_1053
16.9
P10809_1072
14.5
P10809_1082
10.0
P10809_1109
22.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.6
Monaco sample
nTPM
Classical monocyte nTPM: 48.6
Samples: 4
Max nTPM: 53.0
Min nTPM: 39.9
RHH5313_R3680
48.8
RHH5221_R3593
53.0
RHH5250_R3622
52.5
RHH5279_R3651
39.9
Intermediate monocyte nTPM: 51.6
Samples: 4
Max nTPM: 77.2
Min nTPM: 35.2
RHH5314_R3681
77.2
RHH5222_R3594
35.2
RHH5251_R3623
53.7
RHH5280_R3652
40.3
Non-classical monocyte nTPM: 46.1
Samples: 4
Max nTPM: 64.2
Min nTPM: 30.0
RHH5315_R3682
53.1
RHH5223_R3595
30.0
RHH5252_R3624
64.2
RHH5281_R3653
36.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.2
Schmiedel sample id
TPM
Classical monocyte TPM: 22.8
Samples: 91
Max TPM: 29.3
Min TPM: 18.5
MONOCYTES_1
29.3
MONOCYTES_2
29.2
MONOCYTES_3
28.6
MONOCYTES_4
27.9
MONOCYTES_5
27.7
MONOCYTES_6
27.5
MONOCYTES_7
27.2
MONOCYTES_8
26.7
MONOCYTES_9
26.6
MONOCYTES_10
26.4
MONOCYTES_11
26.4
MONOCYTES_12
26.3
MONOCYTES_13
26.2
MONOCYTES_14
26.2
MONOCYTES_15
25.5
MONOCYTES_16
25.5
MONOCYTES_17
25.3
MONOCYTES_18
25.2
MONOCYTES_19
25.2
MONOCYTES_20
25.1
MONOCYTES_21
24.8
MONOCYTES_22
24.7
MONOCYTES_23
24.6
MONOCYTES_24
24.5
MONOCYTES_25
24.4
MONOCYTES_26
24.4
MONOCYTES_27
24.4
MONOCYTES_28
24.3
MONOCYTES_29
24.1
MONOCYTES_30
23.7
MONOCYTES_31
23.4
MONOCYTES_32
23.4
MONOCYTES_33
23.3
MONOCYTES_34
23.3
MONOCYTES_35
23.2
MONOCYTES_36
23.0
MONOCYTES_37
22.9
MONOCYTES_38
22.9
MONOCYTES_39
22.8
MONOCYTES_40
22.7
MONOCYTES_41
22.7
MONOCYTES_42
22.7
MONOCYTES_43
22.7
MONOCYTES_44
22.7
MONOCYTES_45
22.6
MONOCYTES_46
22.6
MONOCYTES_47
22.6
MONOCYTES_48
22.6
MONOCYTES_49
22.5
MONOCYTES_50
22.5
MONOCYTES_51
22.5
MONOCYTES_52
22.4
MONOCYTES_53
22.4
MONOCYTES_54
22.4
MONOCYTES_55
22.3
MONOCYTES_56
22.1
MONOCYTES_57
22.0
MONOCYTES_58
22.0
MONOCYTES_59
21.8
MONOCYTES_60
21.7
MONOCYTES_61
21.5
MONOCYTES_62
21.3
MONOCYTES_63
21.2
MONOCYTES_64
21.1
MONOCYTES_65
21.0
MONOCYTES_66
21.0
MONOCYTES_67
20.9
MONOCYTES_68
20.7
MONOCYTES_69
20.7
MONOCYTES_70
20.7
MONOCYTES_71
20.6
MONOCYTES_72
20.5
MONOCYTES_73
20.5
MONOCYTES_74
20.4
MONOCYTES_75
20.4
MONOCYTES_76
20.3
MONOCYTES_77
20.0
MONOCYTES_78
20.0
MONOCYTES_79
19.9
MONOCYTES_80
19.9
MONOCYTES_81
19.7
MONOCYTES_82
19.6
MONOCYTES_83
19.6
MONOCYTES_84
19.5
MONOCYTES_85
18.8
MONOCYTES_86
18.8
MONOCYTES_87
18.8
MONOCYTES_88
18.7
MONOCYTES_89
18.7
MONOCYTES_90
18.6
MONOCYTES_91
18.5
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Non-classical monocyte TPM: 31.2
Samples: 90
Max TPM: 41.9
Min TPM: 23.7
M2_1
41.9
M2_2
41.3
M2_3
40.0
M2_4
39.9
M2_5
39.6
M2_6
38.3
M2_7
37.9
M2_8
37.3
M2_9
36.5
M2_10
35.8
M2_11
35.8
M2_12
35.3
M2_13
35.0
M2_14
34.7
M2_15
34.5
M2_16
34.4
M2_17
34.2
M2_18
34.2
M2_19
34.0
M2_20
33.9
M2_21
33.6
M2_22
33.5
M2_23
33.3
M2_24
33.2
M2_25
33.1
M2_26
33.1
M2_27
33.1
M2_28
33.0
M2_29
32.8
M2_30
32.8
M2_31
32.8
M2_32
32.7
M2_33
32.5
M2_34
32.4
M2_35
32.1
M2_36
31.8
M2_37
31.7
M2_38
31.3
M2_39
31.3
M2_40
31.1
M2_41
31.1
M2_42
31.0
M2_43
30.9
M2_44
30.9
M2_45
30.9
M2_46
30.8
M2_47
30.7
M2_48
30.7
M2_49
30.5
M2_50
30.3
M2_51
30.3
M2_52
30.2
M2_53
30.1
M2_54
29.9
M2_55
29.9
M2_56
29.9
M2_57
29.9
M2_58
29.8
M2_59
29.8
M2_60
29.8
M2_61
29.7
M2_62
29.3
M2_63
29.3
M2_64
29.3
M2_65
29.2
M2_66
28.5
M2_67
28.0
M2_68
27.9
M2_69
27.8
M2_70
27.6
M2_71
27.6
M2_72
27.5
M2_73
27.3
M2_74
27.2
M2_75
27.0
M2_76
26.8
M2_77
26.8
M2_78
26.8
M2_79
26.7
M2_80
26.6
M2_81
26.5
M2_82
26.2
M2_83
25.8
M2_84
25.8
M2_85
25.7
M2_86
25.6
M2_87
25.5
M2_88
25.3
M2_89
23.9
M2_90
23.7
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