A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.4
nTPM
Monaco:
1.3
nTPM
Schmiedel:
40.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.4
HPA sample
nTPM
NK-cell nTPM: 0.4
Samples: 6
Max nTPM: 1.3
Min nTPM: 0.0
P10809_1013
0.3
P10809_1033
1.3
P10809_1052
0.2
P10809_1071
0.3
P10809_1093
0.0
P10809_1103
0.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.3
Monaco sample
nTPM
NK-cell nTPM: 1.3
Samples: 4
Max nTPM: 1.9
Min nTPM: 0.0
RHH5316_R3683
0.0
RHH5224_R3596
1.9
RHH5253_R3625
1.5
RHH5282_R3654
1.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.0
Schmiedel sample id
TPM
NK-cell TPM: 40.0
Samples: 90
Max TPM: 55.6
Min TPM: 23.5
NK_1
55.6
NK_2
54.9
NK_3
54.5
NK_4
54.4
NK_5
53.5
NK_6
52.5
NK_7
52.5
NK_8
51.9
NK_9
51.6
NK_10
51.0
NK_11
51.0
NK_12
50.7
NK_13
50.1
NK_14
49.9
NK_15
49.9
NK_16
49.2
NK_17
48.1
NK_18
47.4
NK_19
47.0
NK_20
45.9
NK_21
45.8
NK_22
45.2
NK_23
44.2
NK_24
44.1
NK_25
44.1
NK_26
43.6
NK_27
43.6
NK_28
43.4
NK_29
43.1
NK_30
42.7
NK_31
42.7
NK_32
42.5
NK_33
42.2
NK_34
42.1
NK_35
42.1
NK_36
42.0
NK_37
41.7
NK_38
41.7
NK_39
40.9
NK_40
40.7
NK_41
40.7
NK_42
40.6
NK_43
40.4
NK_44
40.3
NK_45
40.2
NK_46
40.2
NK_47
40.1
NK_48
39.7
NK_49
39.2
NK_50
39.1
NK_51
39.0
NK_52
38.5
NK_53
38.2
NK_54
37.7
NK_55
37.6
NK_56
37.3
NK_57
36.9
NK_58
36.9
NK_59
36.1
NK_60
36.1
NK_61
35.9
NK_62
35.7
NK_63
35.3
NK_64
35.2
NK_65
35.1
NK_66
34.1
NK_67
33.7
NK_68
33.6
NK_69
33.5
NK_70
33.4
NK_71
32.9
NK_72
32.7
NK_73
32.3
NK_74
32.0
NK_75
31.7
NK_76
31.5
NK_77
31.5
NK_78
31.3
NK_79
31.2
NK_80
31.0
NK_81
30.8
NK_82
30.0
NK_83
29.4
NK_84
29.4
NK_85
29.3
NK_86
28.1
NK_87
27.1
NK_88
25.9
NK_89
24.4
NK_90
23.5
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