A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.7
nTPM
Monaco:
6.3
nTPM
Schmiedel:
173.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.7
HPA sample
nTPM
Classical monocyte nTPM: 1.5
Samples: 6
Max nTPM: 2.2
Min nTPM: 0.7
P10809_1003
0.7
P10809_1020
1.4
P10809_1039
0.9
P10809_1058
2.0
P10809_1080
1.8
P10809_1107
2.2
Intermediate monocyte nTPM: 2.7
Samples: 6
Max nTPM: 4.7
Min nTPM: 1.9
P10809_1004
2.6
P10809_1023
2.3
P10809_1042
2.8
P10809_1061
2.1
P10809_1081
1.9
P10809_1108
4.7
Non-classical monocyte nTPM: 2.5
Samples: 5
Max nTPM: 3.5
Min nTPM: 0.8
P10809_1005
2.2
P10809_1053
2.8
P10809_1072
0.8
P10809_1082
3.0
P10809_1109
3.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.3
Monaco sample
nTPM
Classical monocyte nTPM: 4.2
Samples: 4
Max nTPM: 6.4
Min nTPM: 2.9
RHH5313_R3680
3.7
RHH5221_R3593
3.8
RHH5250_R3622
2.9
RHH5279_R3651
6.4
Intermediate monocyte nTPM: 6.3
Samples: 4
Max nTPM: 11.8
Min nTPM: 1.9
RHH5314_R3681
4.6
RHH5222_R3594
1.9
RHH5251_R3623
11.8
RHH5280_R3652
6.8
Non-classical monocyte nTPM: 6.1
Samples: 4
Max nTPM: 7.6
Min nTPM: 4.7
RHH5315_R3682
5.8
RHH5223_R3595
7.6
RHH5252_R3624
4.7
RHH5281_R3653
6.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
173.5
Schmiedel sample id
TPM
Classical monocyte TPM: 134.7
Samples: 91
Max TPM: 170.2
Min TPM: 106.2
MONOCYTES_1
170.2
MONOCYTES_2
162.0
MONOCYTES_3
161.9
MONOCYTES_4
157.5
MONOCYTES_5
154.6
MONOCYTES_6
154.2
MONOCYTES_7
153.1
MONOCYTES_8
152.5
MONOCYTES_9
152.0
MONOCYTES_10
149.6
MONOCYTES_11
148.4
MONOCYTES_12
147.0
MONOCYTES_13
146.9
MONOCYTES_14
146.8
MONOCYTES_15
146.6
MONOCYTES_16
146.3
MONOCYTES_17
145.7
MONOCYTES_18
145.3
MONOCYTES_19
145.3
MONOCYTES_20
144.8
MONOCYTES_21
144.6
MONOCYTES_22
144.5
MONOCYTES_23
144.3
MONOCYTES_24
142.9
MONOCYTES_25
141.7
MONOCYTES_26
141.2
MONOCYTES_27
141.1
MONOCYTES_28
140.8
MONOCYTES_29
140.1
MONOCYTES_30
140.0
MONOCYTES_31
139.9
MONOCYTES_32
139.4
MONOCYTES_33
139.1
MONOCYTES_34
138.7
MONOCYTES_35
138.4
MONOCYTES_36
138.4
MONOCYTES_37
138.1
MONOCYTES_38
137.9
MONOCYTES_39
137.7
MONOCYTES_40
137.3
MONOCYTES_41
137.0
MONOCYTES_42
137.0
MONOCYTES_43
136.1
MONOCYTES_44
135.7
MONOCYTES_45
135.5
MONOCYTES_46
135.3
MONOCYTES_47
135.2
MONOCYTES_48
135.2
MONOCYTES_49
134.7
MONOCYTES_50
134.1
MONOCYTES_51
133.8
MONOCYTES_52
133.6
MONOCYTES_53
133.6
MONOCYTES_54
133.1
MONOCYTES_55
132.6
MONOCYTES_56
132.3
MONOCYTES_57
131.1
MONOCYTES_58
130.5
MONOCYTES_59
129.3
MONOCYTES_60
129.0
MONOCYTES_61
128.9
MONOCYTES_62
128.2
MONOCYTES_63
128.0
MONOCYTES_64
127.6
MONOCYTES_65
127.4
MONOCYTES_66
127.2
MONOCYTES_67
127.2
MONOCYTES_68
126.1
MONOCYTES_69
125.6
MONOCYTES_70
125.0
MONOCYTES_71
124.0
MONOCYTES_72
123.0
MONOCYTES_73
122.7
MONOCYTES_74
122.6
MONOCYTES_75
122.4
MONOCYTES_76
122.1
MONOCYTES_77
121.8
MONOCYTES_78
121.2
MONOCYTES_79
120.1
MONOCYTES_80
119.9
MONOCYTES_81
119.7
MONOCYTES_82
119.0
MONOCYTES_83
118.8
MONOCYTES_84
117.3
MONOCYTES_85
117.1
MONOCYTES_86
115.0
MONOCYTES_87
113.0
MONOCYTES_88
111.9
MONOCYTES_89
109.0
MONOCYTES_90
106.8
MONOCYTES_91
106.2
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Non-classical monocyte TPM: 173.5
Samples: 90
Max TPM: 224.3
Min TPM: 100.6
M2_1
224.3
M2_2
222.8
M2_3
214.9
M2_4
213.1
M2_5
210.9
M2_6
207.2
M2_7
206.5
M2_8
206.3
M2_9
205.5
M2_10
205.5
M2_11
205.2
M2_12
204.7
M2_13
204.3
M2_14
203.9
M2_15
202.9
M2_16
201.0
M2_17
200.4
M2_18
199.7
M2_19
195.2
M2_20
195.0
M2_21
194.8
M2_22
194.5
M2_23
191.2
M2_24
191.2
M2_25
191.0
M2_26
190.1
M2_27
190.1
M2_28
188.5
M2_29
188.0
M2_30
186.6
M2_31
185.8
M2_32
185.6
M2_33
185.3
M2_34
185.0
M2_35
184.4
M2_36
183.4
M2_37
182.6
M2_38
182.3
M2_39
182.3
M2_40
181.9
M2_41
181.8
M2_42
181.7
M2_43
178.5
M2_44
178.5
M2_45
178.5
M2_46
177.8
M2_47
175.8
M2_48
173.8
M2_49
173.6
M2_50
173.2
M2_51
172.5
M2_52
171.9
M2_53
171.7
M2_54
170.4
M2_55
170.2
M2_56
169.5
M2_57
168.4
M2_58
167.3
M2_59
165.2
M2_60
164.5
M2_61
163.6
M2_62
163.3
M2_63
162.7
M2_64
162.5
M2_65
160.8
M2_66
158.6
M2_67
157.3
M2_68
156.5
M2_69
154.8
M2_70
152.8
M2_71
151.4
M2_72
151.1
M2_73
149.3
M2_74
147.6
M2_75
146.6
M2_76
146.2
M2_77
146.1
M2_78
145.6
M2_79
145.5
M2_80
143.0
M2_81
140.8
M2_82
139.4
M2_83
139.3
M2_84
129.6
M2_85
118.1
M2_86
117.5
M2_87
115.2
M2_88
107.1
M2_89
104.4
M2_90
100.6
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