A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.1
nTPM
Monaco:
45.0
nTPM
Schmiedel:
225.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.1
HPA sample
nTPM
NK-cell nTPM: 3.2
Samples: 6
Max nTPM: 5.5
Min nTPM: 0.0
P10809_1013
2.7
P10809_1033
3.4
P10809_1052
4.7
P10809_1071
2.6
P10809_1093
0.0
P10809_1103
5.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.0
Monaco sample
nTPM
NK-cell nTPM: 45.1
Samples: 4
Max nTPM: 57.8
Min nTPM: 31.0
RHH5316_R3683
57.8
RHH5224_R3596
47.1
RHH5253_R3625
44.3
RHH5282_R3654
31.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
225.2
Schmiedel sample id
TPM
NK-cell TPM: 225.2
Samples: 90
Max TPM: 319.6
Min TPM: 136.0
NK_1
319.6
NK_2
306.2
NK_3
301.9
NK_4
293.9
NK_5
293.5
NK_6
293.3
NK_7
292.8
NK_8
291.9
NK_9
290.1
NK_10
285.5
NK_11
284.4
NK_12
273.8
NK_13
270.9
NK_14
270.2
NK_15
270.1
NK_16
261.3
NK_17
259.1
NK_18
256.6
NK_19
256.3
NK_20
255.0
NK_21
254.2
NK_22
252.9
NK_23
252.1
NK_24
252.0
NK_25
252.0
NK_26
251.3
NK_27
248.9
NK_28
248.0
NK_29
246.7
NK_30
245.9
NK_31
240.9
NK_32
240.7
NK_33
239.4
NK_34
239.4
NK_35
236.2
NK_36
235.6
NK_37
234.1
NK_38
232.8
NK_39
232.8
NK_40
231.7
NK_41
231.4
NK_42
230.2
NK_43
228.0
NK_44
227.8
NK_45
227.5
NK_46
226.1
NK_47
225.7
NK_48
224.6
NK_49
223.2
NK_50
221.2
NK_51
220.4
NK_52
219.7
NK_53
216.8
NK_54
216.3
NK_55
215.5
NK_56
214.7
NK_57
212.1
NK_58
210.9
NK_59
210.7
NK_60
210.3
NK_61
210.0
NK_62
209.8
NK_63
209.3
NK_64
202.5
NK_65
201.0
NK_66
199.1
NK_67
196.9
NK_68
195.7
NK_69
193.6
NK_70
193.5
NK_71
191.3
NK_72
190.6
NK_73
189.2
NK_74
185.8
NK_75
185.7
NK_76
172.4
NK_77
172.0
NK_78
171.8
NK_79
171.5
NK_80
169.7
NK_81
168.8
NK_82
168.4
NK_83
162.6
NK_84
161.1
NK_85
160.4
NK_86
155.0
NK_87
153.2
NK_88
144.9
NK_89
138.1
NK_90
136.0
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