A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
19.5
nTPM
Monaco:
94.1
nTPM
Schmiedel:
351.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.5
HPA sample
nTPM
Classical monocyte nTPM: 7.8
Samples: 6
Max nTPM: 9.1
Min nTPM: 5.5
P10809_1003
5.5
P10809_1020
9.1
P10809_1039
8.8
P10809_1058
7.9
P10809_1080
6.5
P10809_1107
9.1
Intermediate monocyte nTPM: 11.2
Samples: 6
Max nTPM: 15.3
Min nTPM: 8.0
P10809_1004
11.5
P10809_1023
11.5
P10809_1042
15.3
P10809_1061
11.7
P10809_1081
8.0
P10809_1108
9.2
Non-classical monocyte nTPM: 19.5
Samples: 5
Max nTPM: 41.0
Min nTPM: 11.4
P10809_1005
13.4
P10809_1053
15.2
P10809_1072
41.0
P10809_1082
11.4
P10809_1109
16.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
94.1
Monaco sample
nTPM
Classical monocyte nTPM: 47.3
Samples: 4
Max nTPM: 51.1
Min nTPM: 43.7
RHH5313_R3680
51.1
RHH5221_R3593
50.3
RHH5250_R3622
43.7
RHH5279_R3651
44.2
Intermediate monocyte nTPM: 94.1
Samples: 4
Max nTPM: 115.1
Min nTPM: 82.7
RHH5314_R3681
85.3
RHH5222_R3594
82.7
RHH5251_R3623
115.1
RHH5280_R3652
93.3
Non-classical monocyte nTPM: 81.1
Samples: 4
Max nTPM: 99.7
Min nTPM: 58.2
RHH5315_R3682
99.7
RHH5223_R3595
58.2
RHH5252_R3624
89.5
RHH5281_R3653
77.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
351.7
Schmiedel sample id
TPM
Classical monocyte TPM: 177.4
Samples: 91
Max TPM: 215.1
Min TPM: 137.7
MONOCYTES_1
215.1
MONOCYTES_2
208.4
MONOCYTES_3
206.0
MONOCYTES_4
202.5
MONOCYTES_5
202.3
MONOCYTES_6
201.3
MONOCYTES_7
198.9
MONOCYTES_8
198.7
MONOCYTES_9
197.8
MONOCYTES_10
197.4
MONOCYTES_11
197.0
MONOCYTES_12
195.4
MONOCYTES_13
194.9
MONOCYTES_14
194.7
MONOCYTES_15
193.4
MONOCYTES_16
192.9
MONOCYTES_17
192.5
MONOCYTES_18
192.4
MONOCYTES_19
191.6
MONOCYTES_20
191.1
MONOCYTES_21
189.5
MONOCYTES_22
189.1
MONOCYTES_23
187.3
MONOCYTES_24
186.5
MONOCYTES_25
185.4
MONOCYTES_26
185.3
MONOCYTES_27
184.8
MONOCYTES_28
184.5
MONOCYTES_29
184.0
MONOCYTES_30
183.5
MONOCYTES_31
183.0
MONOCYTES_32
182.8
MONOCYTES_33
182.2
MONOCYTES_34
181.9
MONOCYTES_35
181.6
MONOCYTES_36
181.5
MONOCYTES_37
181.4
MONOCYTES_38
181.3
MONOCYTES_39
181.1
MONOCYTES_40
181.1
MONOCYTES_41
180.8
MONOCYTES_42
180.4
MONOCYTES_43
180.0
MONOCYTES_44
179.8
MONOCYTES_45
179.6
MONOCYTES_46
179.5
MONOCYTES_47
179.5
MONOCYTES_48
178.8
MONOCYTES_49
178.7
MONOCYTES_50
176.8
MONOCYTES_51
176.5
MONOCYTES_52
176.1
MONOCYTES_53
175.8
MONOCYTES_54
174.8
MONOCYTES_55
173.6
MONOCYTES_56
173.0
MONOCYTES_57
172.9
MONOCYTES_58
172.4
MONOCYTES_59
172.3
MONOCYTES_60
171.0
MONOCYTES_61
169.3
MONOCYTES_62
169.2
MONOCYTES_63
168.8
MONOCYTES_64
168.1
MONOCYTES_65
167.6
MONOCYTES_66
167.2
MONOCYTES_67
167.1
MONOCYTES_68
167.1
MONOCYTES_69
166.8
MONOCYTES_70
166.1
MONOCYTES_71
165.7
MONOCYTES_72
165.6
MONOCYTES_73
165.5
MONOCYTES_74
165.3
MONOCYTES_75
164.9
MONOCYTES_76
163.4
MONOCYTES_77
163.0
MONOCYTES_78
161.9
MONOCYTES_79
160.9
MONOCYTES_80
160.8
MONOCYTES_81
160.8
MONOCYTES_82
160.6
MONOCYTES_83
160.0
MONOCYTES_84
157.0
MONOCYTES_85
156.8
MONOCYTES_86
147.8
MONOCYTES_87
147.3
MONOCYTES_88
146.3
MONOCYTES_89
144.2
MONOCYTES_90
139.8
MONOCYTES_91
137.7
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Non-classical monocyte TPM: 351.7
Samples: 90
Max TPM: 432.5
Min TPM: 221.2
M2_1
432.5
M2_2
425.7
M2_3
423.5
M2_4
409.8
M2_5
406.3
M2_6
405.4
M2_7
405.0
M2_8
401.9
M2_9
399.8
M2_10
395.5
M2_11
395.3
M2_12
394.8
M2_13
391.4
M2_14
391.0
M2_15
389.9
M2_16
388.4
M2_17
382.6
M2_18
380.9
M2_19
380.7
M2_20
379.5
M2_21
379.1
M2_22
378.4
M2_23
375.8
M2_24
375.4
M2_25
375.2
M2_26
375.0
M2_27
374.9
M2_28
374.4
M2_29
373.7
M2_30
371.9
M2_31
371.9
M2_32
371.3
M2_33
371.1
M2_34
370.5
M2_35
369.5
M2_36
368.7
M2_37
367.5
M2_38
367.5
M2_39
366.0
M2_40
365.1
M2_41
360.6
M2_42
360.3
M2_43
359.0
M2_44
358.6
M2_45
358.5
M2_46
358.3
M2_47
357.1
M2_48
356.1
M2_49
356.0
M2_50
355.5
M2_51
355.0
M2_52
352.8
M2_53
351.4
M2_54
348.9
M2_55
347.9
M2_56
347.5
M2_57
346.6
M2_58
345.5
M2_59
345.4
M2_60
344.1
M2_61
342.6
M2_62
342.2
M2_63
340.8
M2_64
340.7
M2_65
340.6
M2_66
338.7
M2_67
334.7
M2_68
334.1
M2_69
334.0
M2_70
333.8
M2_71
333.5
M2_72
332.4
M2_73
329.9
M2_74
319.0
M2_75
311.1
M2_76
311.0
M2_77
308.8
M2_78
302.4
M2_79
298.4
M2_80
298.2
M2_81
294.1
M2_82
290.3
M2_83
281.1
M2_84
280.4
M2_85
276.9
M2_86
259.4
M2_87
257.1
M2_88
253.3
M2_89
226.3
M2_90
221.2
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