On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
26.2
nTPM
HPA Brain:
42.9
nTPM
GTEx:
26.2
nTPM
FANTOM5:
30.2
Scaled Tags Per Million
Macaque:
48.1
nTPM
Mouse:
24.0
nTPM
Rat:
40.6
nTPM
Pig:
60.8
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
12975
Sample
Intensity
Spinal cord_01
15226
Spinal cord_02
8948
Spinal cord_03
17569
Spinal cord_04
18427
Spinal cord_05
9994
Spinal cord_06
10724
Spinal cord_07
9991
Spinal cord_08
15644
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
42.9
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 40.9
2193
Male, age 75, both hemispheres
48.2
2818
Female, age 79, both hemispheres
42.1
2819
Male, age 47, both hemispheres
40.8
2734
Male, age 80, both hemispheres
32.5
Cervical spinal cord, central gray nTPM: 35.0
1981
Female, age 72, midline
45.3
2048
Male, age 55, midline
35.5
2565
Male, age 75, midline
33.8
2816
Male, age 47, midline
33.3
2194
Female, age 79, both hemispheres
27.2
Cervical spinal cord, dorsal horn nTPM: 38.3
2296
Male, age 66, both hemispheres
51.8
2173
Female, age 72, unknown
47.2
2069
Male, age 47, both hemispheres
41.9
2297
Male, age 75, both hemispheres
32.9
1877
Male, age 55, unknown
28.4
2721
Male, age 90, both hemispheres
27.5
Cervical spinal cord, ventral horn nTPM: 34.6
2098
Female, age 72, unknown
56.0
2809
Male, age 90, both hemispheres
32.9
2480
Male, age 75, both hemispheres
31.5
2295
Male, age 66, both hemispheres
30.3
2068
Male, age 55, unknown
30.0
2820
Female, age 79, both hemispheres
26.9
Dorsal funiculus (white matter) nTPM: 42.9
2128
Male, age 75, both hemispheres
51.4
2810
Male, age 90, both hemispheres
49.0
2812
Male, age 66, both hemispheres
39.0
2817
Male, age 47, both hemispheres
38.9
2064
Female, age 79, both hemispheres
36.4
Lateral funiculus (white matter) nTPM: 41.6
2099
Male, age 90, both hemispheres
49.4
2094
Female, age 79, both hemispheres
44.4
2192
Male, age 75, both hemispheres
37.0
2294
Male, age 66, both hemispheres
35.8
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
26.2
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 26.2
Samples: 204
Max nTPM: 60.7
Min nTPM: 12.1
Std nTPM: 6.2
Median nTPM: 25.9
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
60.7
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
54.4
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
42.1
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
41.2
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
40.9
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
39.7
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
38.3
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
36.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
36.1
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
36.1
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
35.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
35.3
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
34.6
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
34.5
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
34.3
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
34.2
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
34.2
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
33.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
33.8
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
33.8
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
33.5
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
33.3
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
33.3
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
33.3
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
32.8
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
32.7
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
32.4
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
32.1
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
31.6
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
31.5
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
31.3
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
31.3
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
31.3
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
31.2
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
31.2
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
31.1
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
31.0
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
30.9
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
30.8
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
30.5
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
30.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
30.3
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
30.2
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
30.1
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
29.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
29.5
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
29.5
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
29.5
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
29.4
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
29.3
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
29.3
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
29.0
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
29.0
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
28.9
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
28.9
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
28.9
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
28.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
28.8
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
28.6
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
28.5
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
28.5
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
28.5
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
28.5
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
28.5
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
28.5
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
28.4
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
28.4
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
28.1
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
28.1
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
28.1
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
28.0
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
27.9
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
27.9
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
27.9
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
27.8
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
27.6
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
27.6
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
27.6
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
27.5
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
27.5
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
27.4
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
27.3
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
27.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
27.1
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
27.1
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
27.0
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
27.0
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
27.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
27.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
26.8
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
26.8
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
26.7
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
26.5
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
26.4
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
26.4
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
26.3
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
26.3
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
26.2
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
26.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
26.1
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
26.0
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
26.0
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
25.9
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
25.9
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
25.9
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
25.7
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
25.6
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
25.5
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
25.5
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
25.3
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
25.3
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
25.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
25.1
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
25.0
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
24.9
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
24.8
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
24.8
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
24.7
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
24.7
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
24.6
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
24.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
24.4
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
24.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
24.0
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
23.9
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
23.9
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
23.9
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
23.8
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
23.8
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
23.7
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
23.5
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
23.5
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
23.4
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
23.3
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
23.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
23.3
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
23.3
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
23.2
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
23.1
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
23.1
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
23.0
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
23.0
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
22.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
22.8
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
22.8
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
22.7
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
22.6
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
22.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
22.5
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
22.4
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
22.4
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
22.3
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
22.0
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
21.9
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
21.9
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
21.9
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
21.8
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
21.8
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
21.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
21.7
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
21.7
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
21.6
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
21.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
21.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
21.5
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
21.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
21.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
21.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
21.0
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
20.9
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
20.9
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
20.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
20.5
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
20.5
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
20.4
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
20.0
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
20.0
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
19.8
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
19.7
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
19.6
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
19.4
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
19.2
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
19.1
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
19.1
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
19.1
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
19.0
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
19.0
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
19.0
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
18.9
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
18.9
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
18.5
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
18.3
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
18.2
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
18.0
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
17.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
16.8
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
16.3
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
14.9
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
14.6
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
14.4
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
13.9
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
13.4
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
13.4
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
12.1
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
48.1
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 37.7
Samples: 2
Max nTPM: 40.0
Min nTPM: 35.4
Sample A
40.0
Sample B
35.4
Ventral spinal cord nTPM: 48.1
Samples: 1
Max nTPM: 48.1
Min nTPM: 48.1
Sample A
48.1
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
60.8
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 60.8
Samples: 4
Max nTPM: 73.4
Min nTPM: 49.2
Sample A
Female
64.2
Sample B
Female
49.2
Sample C
Male
73.4
Sample D
Male
56.5
Ventral spinal cord nTPM: 56.7
Samples: 4
Max nTPM: 65.4
Min nTPM: 48.6
Sample A
Female
65.4
Sample B
Female
48.6
Sample C
Male
62.9
Sample D
Male
49.8
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.0
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 24.0
Samples: 4
Max nTPM: 25.8
Min nTPM: 23.2
Sample A
25.8
Sample B
23.2
Sample C
23.2
Sample D
23.9
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
40.6
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 40.6
Samples: 4
Max nTPM: 44.2
Min nTPM: 34.3
Sample A
44.2
Sample A
43.5
Sample A
40.4
Sample A
34.3
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The Human Protein Atlas project is funded
