A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.3
nTPM
Monaco:
63.8
nTPM
Schmiedel:
180.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.3
HPA sample
nTPM
Memory B-cell nTPM: 6.2
Samples: 6
Max nTPM: 11.6
Min nTPM: 2.0
P10809_1017
5.3
P10809_1025
4.5
P10809_1044
11.6
P10809_1063
11.4
P10809_1092
2.0
P10809_1105
2.3
Naive B-cell nTPM: 6.3
Samples: 6
Max nTPM: 8.0
Min nTPM: 3.4
P10809_1011
5.5
P10809_1029
6.5
P10809_1048
3.4
P10809_1067
7.7
P10809_1091
8.0
P10809_1104
6.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
63.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 36.4
Samples: 4
Max nTPM: 45.5
Min nTPM: 26.9
RHH5310_R3677
30.3
RHH5218_R3590
43.0
RHH5247_R3619
26.9
RHH5276_R3648
45.5
Naive B-cell nTPM: 63.8
Samples: 4
Max nTPM: 71.3
Min nTPM: 58.2
RHH5308_R3675
62.4
RHH5216_R3588
71.3
RHH5245_R3617
58.2
RHH5274_R3646
63.2
Non-switched memory B-cell nTPM: 51.5
Samples: 4
Max nTPM: 81.5
Min nTPM: 27.3
RHH5309_R3676
39.2
RHH5217_R3589
81.5
RHH5246_R3618
27.3
RHH5275_R3647
58.0
Plasmablast nTPM: 25.9
Samples: 4
Max nTPM: 42.3
Min nTPM: 11.4
RHH5312_R3679
35.1
RHH5220_R3592
11.4
RHH5249_R3621
14.6
RHH5278_R3650
42.3
Switched memory B-cell nTPM: 43.6
Samples: 4
Max nTPM: 74.0
Min nTPM: 16.0
RHH5311_R3678
16.0
RHH5219_R3591
30.3
RHH5248_R3620
74.0
RHH5277_R3649
54.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
180.2
Schmiedel sample id
TPM
Naive B-cell TPM: 180.2
Samples: 91
Max TPM: 284.8
Min TPM: 114.6
B_CELL_NAIVE_1
284.8
B_CELL_NAIVE_2
275.4
B_CELL_NAIVE_3
262.1
B_CELL_NAIVE_4
237.6
B_CELL_NAIVE_5
233.8
B_CELL_NAIVE_6
229.5
B_CELL_NAIVE_7
227.5
B_CELL_NAIVE_8
227.2
B_CELL_NAIVE_9
225.7
B_CELL_NAIVE_10
225.4
B_CELL_NAIVE_11
224.3
B_CELL_NAIVE_12
222.2
B_CELL_NAIVE_13
222.1
B_CELL_NAIVE_14
220.9
B_CELL_NAIVE_15
220.7
B_CELL_NAIVE_16
217.6
B_CELL_NAIVE_17
216.0
B_CELL_NAIVE_18
215.6
B_CELL_NAIVE_19
213.7
B_CELL_NAIVE_20
211.1
B_CELL_NAIVE_21
206.4
B_CELL_NAIVE_22
204.1
B_CELL_NAIVE_23
202.3
B_CELL_NAIVE_24
201.8
B_CELL_NAIVE_25
199.1
B_CELL_NAIVE_26
198.1
B_CELL_NAIVE_27
197.8
B_CELL_NAIVE_28
197.4
B_CELL_NAIVE_29
196.9
B_CELL_NAIVE_30
191.7
B_CELL_NAIVE_31
190.5
B_CELL_NAIVE_32
188.3
B_CELL_NAIVE_33
187.3
B_CELL_NAIVE_34
186.4
B_CELL_NAIVE_35
185.5
B_CELL_NAIVE_36
185.2
B_CELL_NAIVE_37
180.8
B_CELL_NAIVE_38
179.1
B_CELL_NAIVE_39
178.7
B_CELL_NAIVE_40
177.6
B_CELL_NAIVE_41
177.5
B_CELL_NAIVE_42
176.7
B_CELL_NAIVE_43
176.6
B_CELL_NAIVE_44
175.7
B_CELL_NAIVE_45
175.4
B_CELL_NAIVE_46
174.7
B_CELL_NAIVE_47
174.2
B_CELL_NAIVE_48
174.0
B_CELL_NAIVE_49
171.4
B_CELL_NAIVE_50
170.4
B_CELL_NAIVE_51
170.2
B_CELL_NAIVE_52
169.4
B_CELL_NAIVE_53
168.7
B_CELL_NAIVE_54
168.4
B_CELL_NAIVE_55
167.9
B_CELL_NAIVE_56
167.0
B_CELL_NAIVE_57
166.6
B_CELL_NAIVE_58
166.4
B_CELL_NAIVE_59
165.4
B_CELL_NAIVE_60
164.7
B_CELL_NAIVE_61
163.6
B_CELL_NAIVE_62
163.0
B_CELL_NAIVE_63
162.4
B_CELL_NAIVE_64
161.7
B_CELL_NAIVE_65
160.7
B_CELL_NAIVE_66
159.8
B_CELL_NAIVE_67
158.8
B_CELL_NAIVE_68
157.9
B_CELL_NAIVE_69
157.8
B_CELL_NAIVE_70
156.4
B_CELL_NAIVE_71
154.4
B_CELL_NAIVE_72
151.8
B_CELL_NAIVE_73
151.3
B_CELL_NAIVE_74
151.0
B_CELL_NAIVE_75
149.6
B_CELL_NAIVE_76
148.7
B_CELL_NAIVE_77
147.5
B_CELL_NAIVE_78
146.7
B_CELL_NAIVE_79
143.8
B_CELL_NAIVE_80
142.7
B_CELL_NAIVE_81
142.0
B_CELL_NAIVE_82
137.1
B_CELL_NAIVE_83
137.0
B_CELL_NAIVE_84
134.8
B_CELL_NAIVE_85
132.3
B_CELL_NAIVE_86
132.1
B_CELL_NAIVE_87
131.6
B_CELL_NAIVE_88
129.1
B_CELL_NAIVE_89
126.9
B_CELL_NAIVE_90
125.4
B_CELL_NAIVE_91
114.6
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