A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.1
nTPM
Monaco:
42.1
nTPM
Schmiedel:
69.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.1
HPA sample
nTPM
Classical monocyte nTPM: 1.9
Samples: 6
Max nTPM: 2.5
Min nTPM: 1.4
P10809_1003
1.6
P10809_1020
1.5
P10809_1039
2.0
P10809_1058
2.5
P10809_1080
2.2
P10809_1107
1.4
Intermediate monocyte nTPM: 1.5
Samples: 6
Max nTPM: 2.3
Min nTPM: 0.2
P10809_1004
2.3
P10809_1023
0.2
P10809_1042
2.2
P10809_1061
1.6
P10809_1081
2.2
P10809_1108
0.7
Non-classical monocyte nTPM: 4.1
Samples: 5
Max nTPM: 8.6
Min nTPM: 1.4
P10809_1005
2.7
P10809_1053
2.4
P10809_1072
8.6
P10809_1082
5.6
P10809_1109
1.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.1
Monaco sample
nTPM
Classical monocyte nTPM: 42.1
Samples: 4
Max nTPM: 57.9
Min nTPM: 28.8
RHH5313_R3680
28.8
RHH5221_R3593
33.6
RHH5250_R3622
57.9
RHH5279_R3651
48.0
Intermediate monocyte nTPM: 33.1
Samples: 4
Max nTPM: 56.8
Min nTPM: 23.1
RHH5314_R3681
27.4
RHH5222_R3594
23.1
RHH5251_R3623
25.0
RHH5280_R3652
56.8
Non-classical monocyte nTPM: 26.3
Samples: 4
Max nTPM: 33.3
Min nTPM: 12.2
RHH5315_R3682
29.3
RHH5223_R3595
12.2
RHH5252_R3624
33.3
RHH5281_R3653
30.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
69.6
Schmiedel sample id
TPM
Classical monocyte TPM: 55.8
Samples: 91
Max TPM: 81.1
Min TPM: 35.2
MONOCYTES_1
81.1
MONOCYTES_2
79.5
MONOCYTES_3
77.3
MONOCYTES_4
77.3
MONOCYTES_5
75.6
MONOCYTES_6
75.5
MONOCYTES_7
74.9
MONOCYTES_8
73.6
MONOCYTES_9
73.3
MONOCYTES_10
73.1
MONOCYTES_11
70.6
MONOCYTES_12
69.9
MONOCYTES_13
69.9
MONOCYTES_14
69.6
MONOCYTES_15
68.9
MONOCYTES_16
68.1
MONOCYTES_17
66.6
MONOCYTES_18
66.2
MONOCYTES_19
66.2
MONOCYTES_20
64.8
MONOCYTES_21
64.3
MONOCYTES_22
63.3
MONOCYTES_23
62.6
MONOCYTES_24
62.6
MONOCYTES_25
62.5
MONOCYTES_26
62.0
MONOCYTES_27
61.6
MONOCYTES_28
61.5
MONOCYTES_29
61.5
MONOCYTES_30
59.9
MONOCYTES_31
59.5
MONOCYTES_32
58.9
MONOCYTES_33
57.9
MONOCYTES_34
57.6
MONOCYTES_35
57.0
MONOCYTES_36
56.7
MONOCYTES_37
56.6
MONOCYTES_38
56.5
MONOCYTES_39
56.4
MONOCYTES_40
56.0
MONOCYTES_41
56.0
MONOCYTES_42
56.0
MONOCYTES_43
55.9
MONOCYTES_44
55.7
MONOCYTES_45
55.6
MONOCYTES_46
55.6
MONOCYTES_47
55.4
MONOCYTES_48
54.8
MONOCYTES_49
54.5
MONOCYTES_50
54.2
MONOCYTES_51
54.0
MONOCYTES_52
53.3
MONOCYTES_53
53.2
MONOCYTES_54
52.7
MONOCYTES_55
52.5
MONOCYTES_56
52.2
MONOCYTES_57
51.8
MONOCYTES_58
50.8
MONOCYTES_59
50.4
MONOCYTES_60
50.3
MONOCYTES_61
50.2
MONOCYTES_62
50.2
MONOCYTES_63
49.3
MONOCYTES_64
48.7
MONOCYTES_65
48.7
MONOCYTES_66
48.1
MONOCYTES_67
46.9
MONOCYTES_68
46.6
MONOCYTES_69
46.4
MONOCYTES_70
46.1
MONOCYTES_71
45.6
MONOCYTES_72
45.4
MONOCYTES_73
45.0
MONOCYTES_74
44.7
MONOCYTES_75
44.1
MONOCYTES_76
44.1
MONOCYTES_77
43.9
MONOCYTES_78
43.8
MONOCYTES_79
43.7
MONOCYTES_80
43.6
MONOCYTES_81
42.8
MONOCYTES_82
42.1
MONOCYTES_83
41.4
MONOCYTES_84
40.9
MONOCYTES_85
40.9
MONOCYTES_86
40.2
MONOCYTES_87
40.0
MONOCYTES_88
39.1
MONOCYTES_89
38.7
MONOCYTES_90
36.6
MONOCYTES_91
35.2
Show allShow less
Non-classical monocyte TPM: 69.6
Samples: 90
Max TPM: 106.5
Min TPM: 40.8
M2_1
106.5
M2_2
98.3
M2_3
91.4
M2_4
90.3
M2_5
89.6
M2_6
88.8
M2_7
87.7
M2_8
87.5
M2_9
87.0
M2_10
86.9
M2_11
84.9
M2_12
83.5
M2_13
82.4
M2_14
81.5
M2_15
81.0
M2_16
80.5
M2_17
80.0
M2_18
80.0
M2_19
80.0
M2_20
79.7
M2_21
79.5
M2_22
79.4
M2_23
79.0
M2_24
79.0
M2_25
78.6
M2_26
78.6
M2_27
78.1
M2_28
77.6
M2_29
77.6
M2_30
76.6
M2_31
76.2
M2_32
76.1
M2_33
75.2
M2_34
73.1
M2_35
73.1
M2_36
72.5
M2_37
72.2
M2_38
72.1
M2_39
71.3
M2_40
71.2
M2_41
70.9
M2_42
69.9
M2_43
69.7
M2_44
69.2
M2_45
68.8
M2_46
68.6
M2_47
68.5
M2_48
68.4
M2_49
68.2
M2_50
68.1
M2_51
68.1
M2_52
67.7
M2_53
67.7
M2_54
66.8
M2_55
65.7
M2_56
65.6
M2_57
65.2
M2_58
64.7
M2_59
64.6
M2_60
64.5
M2_61
64.3
M2_62
63.1
M2_63
63.0
M2_64
62.5
M2_65
61.6
M2_66
60.2
M2_67
59.5
M2_68
59.0
M2_69
58.8
M2_70
58.4
M2_71
58.2
M2_72
58.2
M2_73
57.8
M2_74
56.1
M2_75
55.9
M2_76
55.9
M2_77
55.1
M2_78
54.8
M2_79
54.5
M2_80
54.2
M2_81
53.9
M2_82
53.4
M2_83
52.1
M2_84
51.5
M2_85
51.4
M2_86
51.1
M2_87
48.5
M2_88
48.5
M2_89
44.1
M2_90
40.8
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
